Ola Brynildsrud's repositories
GlobalL4scripts
A collection of scripts used for the global L4 MTB phylogeography paper
PuppetMaster
Tools for manipulating sequencing data, multiple sequence alignments and phylogenetic trees
Simulate_pan_genome
Simulates a pan-genome
big-list-of-naughty-strings
The Big List of Naughty Strings is a list of strings which have a high probability of causing issues when used as user-input data.
clean_mlst_results
Simple script for cleaning and collating MLST result files
pooledsampling-covid-simulation
Estimating the effect of pooled sampling in testing for Covid-19 through simulations in R
dist-outliers
Detection of outliers in distance matrices
emm_typing
Typing of emm genes in Streptococcus pyogenes
ffiscripts
A collection of scripts used during my time at FFI
filter-plasmid-contigs-bacillus
A script for filtering contigs by header name
lombardy-norway
Data about flights between Norway and Lombardy, and nCoV-19 cases
niph_tb_pipeline
WGS pipeline for Mycobacterium tuberculosis at the Norwegian Institute of Public Health (NIPH)
originator
Rotate circular replicon to start with dnaA gene
tb
Nextstrain build for tuberculosis