adijatj

VFCs

Code for de novo discovery of viral families in virome data

JMAG_JVD

This is a repository of the codes used in the Tomofuji et al (prokaryotic and viral genomes recovered from 787 Japanese gut metagenomes revealed microbial features associated with diets, populations, and diseases).

PIGC

The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.

FDP

"Strain detection and genetic diversity in Mediterranean marine microbial populations" Final Degree Project repository. Includes scripts and files created and used to perform the analyses mentioned in the project manuscript.

R_Intro_Winter_2023

Introduction to the R programming language for research scientists

Blupf90TutorialStandard

A tutorial of the BLUPF90 family programs

data

Data files useful for BLUPF90 programs

Groningen-Microbiome

Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen

NEC-Virome

Graham_2021_forensics_human_virome

Identification of 59 putative human skin viral biomarkers suitable for human identification from the core stable human skin virome's of 42 subjects.

PhylogenomicsWorkflow

A workflow to generate a phylogentic tree with your Genomes

AMPHORA2

An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.

biobakery

bioBakery tools for meta'omic profiling

phylogenomics-tools

Scripts for automating tasks in phylogenetics with microbial genomes

MotherDaughter

nextalign

🧬 Viral genome reference alignment

Autometa

Autometa: Automated Extraction of Genomes from Shotgun Metagenomes

metagenome_assembly_pipeline

A pipeline to go from raw sequencing data to high quality bins and pretty plots.