Adam Struck's repositories
cube
📊 Cube — The Semantic Layer for Building Data Applications
querybook
Querybook is a Big Data Querying UI, combining collocated table metadata and a simple notebook interface.
jslt
JSON query and transformation language
badger
Fast key-value DB in Go.
bunny
Reproducible Analyses for Bioinformatics - Java
grip
Graph Database for integrative Analysis
cytoscape.js-popper
A wrapper for Popper.js that lets you position divs relative to Cytoscape elements
ebsmount
Mount and unmount EBS volumes on an EC2 instance
Amazon-S3-FileSystem-NIO2
An S3 File System Provider for Java 7
batchit
simple jobs submission via command-line for AWS batch
grpc-gateway
gRPC to JSON proxy generator following the gRPC HTTP spec
ophion
Language for making graph queries from data
cromwell
Workflow Execution Engine using WDL
centaur
Cromwell integration testing environment
adamstruck.github.io
Personal Website
vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
CGP-Somatic-Docker
Dockerised and simplified version of SeqWare-CGP-SomaticCore
vcf2maf-tools
Suite of tools from https://github.com/mskcc/vcf2maf/
Seqware-BWA-Workflow
This is the BWA workflow used in the PanCancer project used to allign all the BAM files.
fastq2bam
Convert lane level fastq files to unaligned BAM files with PCAWG style header
docker-shiny-server
Docker container for Shiny Server
homebrew
:beer: The missing package manager for OS X.
cgpbox
Core calling tools in a convenient docker image
wdl_workflow_app
Webservice for managing and running WDL workflows