adamjorr

somatic-variation

Utilities for identifying somatic variants, even in reference-less species

kbbq

reference-free base quality score recalibration

kbbq-py

k-mer based base quality recalibration

2018-05-03-LBNL

Data Carpentry Genomics workshop at Lawrence Berkeley National Laboratory on 3-4 May 2018

adamjorr.github.io

Github Pages Page

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

dissertation

talks

Talks I've given

arch-packages

My PKGBUILDs for some packages

business-cards

cv

My CV and resume

denovogear

A program to detect denovo-variants using next-generation sequencing data. (http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html)

eminem

mixtures of negative multinomials (mnm) for modeling sequencing data

gatk

Official code repository for GATK versions 4 and up

grants

Repository for grant applications

gTTS-cog

A Red cog for Google Text To Speach

hap.py

Haplotype VCF comparison tools

jelly

jupyterlab

JupyterLab computational environment.

kbbq-paper

A paper describing Base Quality Score Recalibration with kbbq

Lighter

Fast and memory-efficient sequencing error corrector

mengtzu.github.io

ms-bidet

Mass Spec Biomarker Discovery with Exact Tests

numpy

The fundamental package for scientific computing with Python.

pareload

Script to reload a PulseAudio module

posters

Posters I've made

RMarkdownDIBSI2018

2018 DIBSI workshop practice

simc-binder

A binder repository for using Simulationcraft

typeshed

Collection of library stubs for Python, with static types

warcraftlogs

WarcraftLogs API client