abennici / StockMonitoringTool

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Add 'Workflow Considerations'

aenieblas opened this issue · comments

Add this text to the Length-based information page before References. Also, add another ‘Considerations’ tab, e.g. “Workflow Considerations” before the Data Considerations tab :

“To set up this length-based workflow in the Stock Monitoring Tool :

  1. Upload a size frequency data set (see Data Considerations or the Elefan Sample dataset)
  2. Adjust the Assessment Settings:
    a. Data Settings - adjust the aggregation, bin size and moving average (MA) of the dataset to optimise cohort recognition by the Elefan algorithm
    b. Elefan - set the search space of the Elefan algorithm to estimate growth parameters
    c. Stock status - set the parameters required to estimate mortality and perform YPR (and SPR; optional)
  3. Check and Run the Assessment
    a. Run a check on the parameterisations prior to running the full assessment
    b. Run the assessment. Watch for the progress bar in the lower right corner to help
  4. Download the report as a pdf

Further information can be found in the popup information buttons at each field, and in the Data, Methods, and Results Considerations tabs. Note that error messages may display in the center of the page and in place of any figures where an error has occurred.”

Sorry Alexandre - in the Intro and on the Workflow tab, please edit text and add a hyperlink to download the sample dataset:

"To set up this run the length-based workflow in the Stock Monitoring Tool :

  1. Upload a size frequency data set (see Data Considerations or the href="www.xxxx.xx", Elefan Sample dataset)
  2. Adjust the Assessment Settings:
    a. Data Settings - select the years of data to include in the analysis, adjust the aggregation, bin size and moving average (MA) of the dataset to optimise cohort recognition by the Elefan algorithm;
    b. Elefan - set the search space of the Elefan algorithm to estimate growth parameters
    c. Stock status - set the parameters required to estimate mortality and perform YPR (and SPR; optional)
  3. Check and Run the Assessment
    a. Run a check on the parameterisations prior to running the full assessment (Run Check button)
    b. Run the assessment (Run Assessment button). Watch for the progress bar in the lower right corner to help center of the screen
  4. Download the report as a pdf (Download Report button).
    5. The Reset button removes the uploaded data and resets the settings to default.
    Further information can be found in the popup information buttons at each field, and in the Data, Methods, and Results Considerations tabs. Note that error messages may display in the center of the page and in place of any figures where an error has occurred.”