aaronmussig

PhyloDM

Efficient calculation of phylogenetic distance matrices.

magna

A collection of bioinformatic datasets and utilities I use in my everyday life.

metatree

Visualisation of polyphyletic groups between phylogenetic trees to a reference tree.

VTracker

For tracking the relationship between group membership changes across versions.

FastANI

Wrapper for FastANI.

impact-of-contamination-on-taxonomy

chiton

Chiton provides a Python wrapper to commonly used bioinformatics programs.

cytos

dash-component-boilerplate

Get started creating your own Dash components here.

ezaai

EzAAI - High Throughput Prokaryotic AAI Calculator

gunc

Python package for detection of chimerism and contamination in prokaryotic genomes.

rsrq

A minimal Redis-backed job queue.

Indizio

A visual analytics tool to investigate correlated data structures using heatmaps, networks, and network statistics.

java-avl-tree

An implementation of an AVL Tree (self-balancing binary search tree) in Java.

lpsn-extract-genus-names

Parses the LPSN genus names of latin origin and outputs a table.

m.chuvochina-16s-tree-vs-gtdb

OctoRelay

OctoPrint / Octopi plugin to control relays

prole

rq-dashboard-api

A bespoke version of RQ dashboard that is hyper-specific to my use case.

rq-dashboard-web

rq-sentinel-api

rq-sentinel-web

sarand

To extract AMR genes and their neighborhood

test-action

test-action2