Alex Sneddon's repositories
eventparser
For parsing aligned event files from Nanopolish eventalign to HDF5 format.
bonito
A PyTorch Basecaller for Oxford Nanopore Reads
Language:PythonNOASSERTION000
CTCDecoder
Connectionist Temporal Classification (CTC) decoding algorithms: best path, beam search, lexicon search, prefix search, and token passing. Implemented in Python.
Language:PythonMIT000