a-slide / pycoQC

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

Home Page:https://a-slide.github.io/pycoQC/

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The channel activity plot is not working as expected for Promethion data

a-slide opened this issue · comments

When loading a Prom Seq summary file there is an issue in how data are collected for the channel activity plot ending up in having a massive array stored in the HTML file

See example of plot below

newplot

Although it doesn't prevent pycoQC from working, this needs to be should be solved as the file generated is massive and the plot is mostly empty

It was just a stupid error in the number of channels... 40000 instead of 3000 for Promethion.

Fixed. That's the Promethion output now
newplot