a-slide / pycoQC

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

Home Page:https://a-slide.github.io/pycoQC/

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is it possible to implement input as fastq reads and have output summary stats in tab separated txt/tsv?

unique379r opened this issue · comments

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No, Fastq files don't contain the required information for pycoQC. You need to provide a sequencing summary file generated by Guppy of MINknow.