min / max length filtering

Question

min / max length filtering

pgtb opened this issue 5 years ago · comments

Plateforme Genome Transcriptome de Bordeaux commented 5 years ago

First thanks a lot for your nice and useful tool !

I am just asking if is it possible to add a minimum (and maximum) read length as new filtering parameters. Could be useful to get a quick view of what we can real expect for target sequencing; amplicons sequencing etc.

thank you

all the best

Adrien Leger · Answer 1 · Tue Oct 22 2019 16:14:37 GMT+0800 (China Standard Time)

I actually recently added an option for that: --min_pass_len
If you update to the latest version (2.5.0.14) it should be there.
Cheers

Plateforme Genome Transcriptome de Bordeaux · Answer 2 · Tue Oct 22 2019 16:15:55 GMT+0800 (China Standard Time)

OK Thanks a lot for your quick reply ! best

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