ZacharyWang-007

perceiver-pytorch

Implementation of Perceiver, General Perception with Iterative Attention, in Pytorch

awesome-deep-learning-single-cell-papers

PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

pubmed_parser

:clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset

hover_net

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

deepcell-tf

Deep Learning Library for Single Cell Analysis

tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

Awesome-Domain-Generalization

Awesome things about domain generalization, including papers, code, etc.

PathomicFusion

Fusing Histology and Genomics via Deep Learning - IEEE TMI

dca

Deep count autoencoder for denoising scRNA-seq data

DL-ECG-Review

A Review of Deep Learning Methods on ECG Data

awesome_spatial_omics

tools and notes for spatial omics

Awesome-Hypergraph-Network

A curated list of Hypergraph Learning, Hypergraph Theory, Hypergraph Dataset and Hypergraph Tool.

PORPOISE

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

HyperGCN

NeurIPS 2019: HyperGCN: A New Method of Training Graph Convolutional Networks on Hypergraphs

MCAT

Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021

Curriculum-Labeling

[AAAI 2021] Curriculum Labeling: Revisiting Pseudo-Labeling for Semi-Supervised Learning

RetCCL

MMGL

Multi-modal Graph learning for Disease Prediction (IEEE Trans. on Medical imaging, TMI2022)

HarmoFL

[AAAI'22] HarmoFL: Harmonizing Local and Global Drifts in Federated Learning on Heterogeneous Medical Images

SAM-Med2D

SAM-Med2D: Bridging the Gap between Natural Image Segmentation and Medical Image Segmentation

Histomorphological-Phenotype-Learning

Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Quesne J.*, Tsirigos A.*, and Yuan K.* Mapping the landscape of histomorphological cancer phenotypes using self-supervised learning on unlabeled, unannotated pathology slides. 2024'

FED-Occluded-ReID

This is the Pytorch implementation of Feature Erasing and Diffusion Network for Occluded Person Re-Identification (CVPR2022).

Review_Molecular_profile_prediction_GNN

[The Lancet Digital Health, MICCAI2020 Oral] The official code of "Spatially-aware Graph Neural Networks and Cross-level Molecular Profile Prediction in Colon Cancer Histopathology: A Retrospective Multicentre Cohort Study"

NAGCN

G-HANet

MDMIL

Against Tumor Heterogeneity: Multiplex-Detection-Based Multiple Instance Learning for Whole Slide Image Classification

SpaTrio

Surformer

qptiff

Tools for qptiff files