ZZF0

PlotNeuralNet

Latex code for making neural networks diagrams

MedSAM

Segment Anything in Medical Images

TotalSegmentator

Tool for robust segmentation of >100 important anatomical structures in CT and MR images

Medical-SAM-Adapter

Adapting Segment Anything Model for Medical Image Segmentation

SAM4MIS

SAM & SAM 2 for Medical Image Segmentation: Open-Source Project Summary

TIGRE

TIGRE: Tomographic Iterative GPU-based Reconstruction Toolbox

Medical-SAM2

Medical SAM 2: Segment Medical Images As Video Via Segment Anything Model 2

BAM

Official PyTorch Implementation of Learning What Not to Segment: A New Perspective on Few-Shot Segmentation (CVPR'22 Oral & TPAMI'23).

torch-radon

Computational Tomography in PyTorch

VISTA

MONAI Versatile Imaging Segmentation and Annotation

CIL

A versatile python framework for tomographic imaging

SAM2-UNet

SAM2-UNet: Segment Anything 2 Makes Strong Encoder for Natural and Medical Image Segmentation

learned_primal_dual

Learned Primal-Dual Reconstruction

dynamic-network-architectures

DU-GAN

DU-GAN: Generative Adversarial Networks with Dual-Domain U-Net Based Discriminators for Low-Dose CT Denoising

WalnutReconstructionCodes

Python and MATLAB scripts for computing reconstruction from an openly available X-ray data set

pySART

Tomographic reconstruction using the Simultaneous Algebraic Reconstruction Technique (SART) implemented in python.

CSET

CSET (Compressed Sensing Electron Tomography)-toolbox is a three-dimensional TV-based compressed sensing reconstruction toolbox that consists of algebraic iterative algorithms (SART and SIRT) with total variation (TV) based CS. In addition, it integrates a Fast Iterative Shrinkage-Thresholding Algorithm (FISTA) that is an acceleration method to speed up the algorithm convergence.

CT-Recon

Tools for X-ray CT reconstruction

DuDoTrans

This code is an official implementation of "DuDoTrans: Dual-Domain Transformer for Sparse-View CT Reconstruction".

astra-toolbox-for-cone-beam

This is a collection of Python scripts for implementing ASTRA Toolbox for cone-beam X-ray CT reconstruction.

KCT_cbct

Fast, accurate and reliable software for algebraic CT reconstruction

CPC-SAM

SR-cycleGAN

CycleGAN for super-resolution: from Clinical CT to Micro CT

DRONE

DRONE focus on reconstructing good images from CT scanner with 60 views of fan-beam geometry.

phasetorch

Phase-Retrieval Software for X-ray Phase-Contrast Tomography

SART-ASTRA

ASTRA implementation of the simultaneous algebraic reconstruction technique (SART) with superiorization

Dual-AGNet

Dual-domain attention-guided low-dose CBCT reconstruction

AirNet-SNL

AirNet-SNL is a Python package for computed tomography (CT) reconstruction. It implements a machine learning model to reconstruct 2D slices from 1D projections. It takes sparse data as input, including decimated angles or views.

torch-radon

A PyTorch extension to compute radon transform and its adjoint operator using gpu