Question: Is it possible to output a table of IDDT / pLDDTs?
dbolser opened this issue · comments
The tool nicely outputs a PNG with predicted IDDT against position in the chain, but I'd really like to get that data as a table.
Searching the output directories, I can't seem to find it... Is it in there somewhere?
Is there a flag to generate it?
Many thanks,
Dan.
The plddt, pae, max_ptm, ptm, and iptm values are stored in a file named **_scores_rank_00*_alphafold2_**_*_model_*_seed_00*.json. You can parse these values per the predicted pdb file.
I'm so sorry, I was sure I had checked those files!
Many thanks.