YaoMeng94

zotfile

Zotero plugin to manage your attachments: automatically rename, move, and attach PDFs (or other files) to Zotero items, sync PDFs from your Zotero library to your (mobile) PDF reader (e.g. an iPad, Android tablet, etc.), and extract PDF annotations.

gmmreg

Implementations of the robust point set registration algorithm described in "Robust Point Set Registration Using Gaussian Mixture Models", Bing Jian and Baba C. Vemuri, IEEE Transactions on Pattern Analysis and Machine Intelligence, 2011, 33(8), pp. 1633-1645. For a Python implementation, please refer to http://github.com/bing-jian/gmmreg-python.

PySurfer

Cortical neuroimaging visualization in Python

informationtransfermapping

Public code release for Ito, Kulkarni, Schultz, Mill, Chen, Solomyak, Cole (2017)

bertviz

BertViz: Visualize Attention in NLP Models (BERT, GPT2, BART, etc.)

gramm

Gramm is a complete data visualization toolbox for Matlab. It provides an easy to use and high-level interface to produce publication-quality plots of complex data with varied statistical visualizations. Gramm is inspired by R's ggplot2 library.

afni

Official AFNI source and documentation

iina

The modern video player for macOS.

drawio-desktop

Official electron build of draw.io

JointEmbedding

bidser

Working with Brain Imaging Data Structure in R

AppleSiliconForNeuroimaging

Review the challenges and potential of ARM-based Apple Silicon macOS for brain imaging research

performance

:muscle: Models' quality and performance metrics (R2, ICC, LOO, AIC, BF, ...)

cbrewer2

Cynthia Brewer's Color Brewer colormap palettes, ported to MATLAB, with nice interpolation.

JuSpace

This is the repository for the JuSpace toolbox allowing for cross-modal correlations between imaging data and positron emission tomography derived information

budapest-fmri-data

Quality assurance analyses of fMRI data collected while participants watched The Grand Budapest Hotel by Wes Anderson.

heritable_network_topography

genevo

The website of the GenEvo project, conducted at the Institut Pasteur of Paris.

qsiprep

Preprocessing and reconstruction of diffusion MRI

py_vb_toolbox

Vogt-Bailey index toolbox in Python

matlab_vb_toolbox

Vogt-Bailey toolbox in Matlab

ManifoldTutorial

Matlab exercises with solutions to implement and visualise concepts from Sara Solla's talk on World Wide Neuro (Apr 29, 2020)

reg-fusion

Python implementation of Wu et al (2018)'s registration fusion

BigBrainWarp

BigBrainWarp

GRETNA

A Graph-theoretical Network Analysis Toolkit in MATLAB

cifti-matlab

MATLAB code for reading and writing CIFTI connectivity files

bycycle

Cycle-by-cycle analysis of neural oscillations.

Gordon_2020_PNAS

carpetplotR

Fast and easy visualization of fMRI data quality using carpet plots.

SynthSR

A framework for joint super-resolution and image synthesis, without requiring real training data