Yao Meng's starred repositories
Zotero-Dark-Theme
userChrome.css file for a Zotero dark theme. Suggestions for improvements are welcome.
data-openneuro
DSI Studio Cloud is a GitHub repository that uses GitHub's cloud computing resource to analyze diffusion MRI data. It can construct tractography and analyze its diffusion and shape metrics. The code can be extended to accomplish any command line functions provided in DSI Studio.
SPHARM-PDM
Shape analysis has become of increasing interest to the medical community due to its potential to precisely locate morphological changes between healthy and pathological structures. SPHARM-PDM is a tool that computes point-based models using a parametric boundary description for the computing of Shape analysis.
bidsconvertr
Converts DICOM data to NIfTI and finally to BIDS
Thalamic-Functional-Atlas
This repo contains Thalamic functional anatomy parcels at rest. For detailed information, please have a look at the papers below.
infant-abcd-bids-pipeline
Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.
dcan-infant-pipeline
The actual pipeline code, based on hcp, for human infants
nda-abcd-s3-downloader
Tool for downloading ABCD_BIDS inputs and derivatives from the ABCD-BIDS NDA Collection 3165.
nda-abcd-s3-downloader
Tool for downloading ABCD_BIDS inputs and derivatives from the ABCD-BIDS NDA Collection 3165.
abcd-hcp-pipeline
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
PaletteerGallery
my visual color palette gallery for paletteer R pkg
hippunfold
BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
dominance-analysis
This package can be used for dominance analysis or Shapley Value Regression for finding relative importance of predictors on given dataset. This library can be used for key driver analysis or marginal resource allocation models.
hansen_receptors
Data and code supporting Hansen et al., 2022 "Mapping neurotransmitter systems to the structural and functional organization of the human neocortex"
r-color-palettes
Comprehensive list of color palettes available in R β€οΈπ§‘ππππ
scientific-visualization-book
An open access book on scientific visualization using python and matplotlib
Scientific-Inkscape
Scientific Inkscape: Inkscape extensions for figure resizing and editing
ciftiTools
ciftiTools R package
parcellation_fragmenter
Fragments FreeSurfer parcellation annotation in N-equal sized parcels