XILOUYUE7

CDTrans

[ICLR2022] CDTrans: Cross-domain Transformer for Unsupervised Domain Adaptation

HyGAnno

CCAN

A cell cycle-aware network for data integration of scRNA-seq and scATAC-seq data

scapGNN

Graph Neural Network-Based Framework for Single Cell Active Pathways and Gene Modules Analysis

Awesome-Mamba-Collection

A curated collection of papers, tutorials, videos, and other valuable resources related to Mamba.

MAGNN

Metapath Aggregated Graph Neural Network for Heterogeneous Graph Embedding

Graph-Neural-Networks-With-Heterophily

This repository contains the resources on graph neural network (GNN) considering heterophily.

MECCH

MECCH: Metapath Context Convolution-based Heterogeneous Graph Neural Networks

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

awesome-deep-learning-single-cell-papers

SpoT-Mamba

SpoT-Mamba: Learning Long-Range Dependency on Spatio-Temporal Graphs with Selective State Spaces (To appear in Spatio-Temporal Reasoning and Learning (STRL) Workshop at International Joint Conference on Artificial Intelligence (IJCAI), 2024)

gat-mamba

Combining Graph Neural Network and Mamba to Capture Local and Global Tissue Spatial Relationships in Whole Slide Images

GCGALDA

A method of enhancing heterogeneous graph representation for predicting the associations between lncRNAs and diseases

GOAT

Official Code Repository for the paper "Graph Ordering Attention Networks"

HGB

Revisiting, benchmarking, and refining Heterogeneous Graph Neural Networks.

ie-HGCN

Interpretable and Efficient Heterogeneous Graph Convolutional Network, IEEE TKDE 2021

HINormer

pyHGT

Code for "Heterogeneous Graph Transformer" (WWW'20), which is based on pytorch_geometric

Deep-CNN-LSTM-for-HAR

Deep CNN-LSTM With Self-Attention Model for Human Activity Recognition Using Wearable Sensor

SeHGNN

Pan-Mamba

Pan-Mamba: Effective Pan-Sharpening with State Space Model

SPACEL

scGPCL

The official source code for "Deep single-cell RNA-seq data clustering with graph prototypical contrastive learning", accepted at Bioinformatics (Volume 39, June 2023) and 2023 ICML workshop on Computational Biology.

scGAC

single-cell graph attentional clustering

mamba-minimal

Simple, minimal implementation of the Mamba SSM in one file of PyTorch.

deepmaps

Single-cell biological network inference using a heterogeneous graph transformer

GMN

mamba

Mamba SSM architecture

Graph-Mamba

Graph-Mamba: Towards Long-Range Graph Sequence Modelling with Selective State Spaces

sceasy

A package to help convert different single-cell data formats to each other