WanyanW's repositories
biostar-central
Biostar Q&A
Bootcamp
biostar
bootcamp-central
PSU bootcamp on reproducible research
coursera-Applied-Data-Science-with-Python
Repository for coursera specialization Applied Data Science with Python by University of Michigan
Dev
A bunch of scripts in Development
gitnotes
gitnotes
MetaP
Metagenomics profiling is a Perl package for 16S rRNA gene sequences analysis
NADC-Microbiome-Yang
Code for microbiome and RNA sequence analyses in the study of NADC as an intravesical precision theranostic agent for interstitial cystitis
nbis-meta
A snakemake workflow for metagenomic projects
OmisDataPipepline
This repo will include the steps to build an ‘omics analysis pipeline, which involved multiple omis data types: amplicon seq, metagenomics, sc RNA-Seq etc.
phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
RapMap
Rapid sensitive and accurate read mapping via quasi-mapping
workshop_material
Pandas tutorial for Genomix @ PSU, Spring 2016