VonRosenchild

alevin-fry

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

arcs

🌈Scaffold genome sequence assemblies using linked read sequencing data

azure_arc

Automated Azure Arc environments

b3-basic-batchsize-benchmark

A quick benchmark with different batch sizes that prompted by the "Do Batch Sizes Actually Need to be Powers of 2?" article.

bamtocov

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

ConvNeXt

Code release for ConvNeXt model

EarlGrey

Earl Grey: A fully automated TE curation and annotation pipeline

flopp

flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.

genomescope

Fast genome analysis from unassembled short reads

git-cliff

A highly customizable Changelog Generator that follows Conventional Commit specifications ⛰️

gradio

Create UIs for your machine learning model in Python in 3 minutes

lil-log

Lilian's Blog

mold

mold: A Modern Linker

nanoq

Minimal but speedy quality control for nanopore reads in Rust :bear:

orleans

Cloud Native application framework for .NET

Polypolish

a short-read polishing tool for long-read assemblies

ripgrep

ripgrep recursively searches directories for a regex pattern while respecting your gitignore

rust-fmlrc

rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

SC-300-Identity-and-Access-Administrator

sd

Intuitive find & replace CLI (sed alternative)

sql-spark-connector

Apache Spark Connector for SQL Server and Azure SQL

tokei

Count your code, quickly.

torchhd

Torchhd is a Python library for Hyperdimensional Computing

vgp-assembly

VGP repository for the genome assembly working group

Azure-MG-Sub-Governance-Reporting

AzGovViz (Azure Governance Visualizer) is a PowerShell script that captures Azure Governance related information such as Azure Policy, RBAC (a lot more) by polling Azure ARM and Microsoft Graph APIs. From the collected data AzGovViz provides visibility on your HierarchyMap, creates a TenantSummary, creates DefinitionInsights and builds granular ScopeInsights on Management Groups and Subscriptions.

linfa

A Rust machine learning framework.

pulsar

Apache Pulsar - distributed pub-sub messaging system

spark-1

Apache Spark - A unified analytics engine for large-scale data processing

VINCE

VINCE is the Vulnerability Information and Coordination Environment developed and used by the CERT Coordination Center to improve coordinated vulnerability disclosure. VINCE is a Python-based web platform.