VarIr

Roman Feldbauer's repositories

scikit-hubness

A Python package for hubness analysis and high-dimensional data mining

Language:PythonBSD-3-Clause42 4 39

copac

COPAC clustering

Language:Jupyter NotebookGPL-3.04 2 7

BinSanity

Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation

Language:PythonGPL-3.0000

BiocOncoTK

Bioconductor components for general cancer genomics

Language:R010

cf-ddns

Cloudflare DNS client

Language:PythonMIT010

DeepFam

Deep learning based alignment-free method for protein family modeling and prediction

Language:Python010

thundersvm

ThunderSVM: A Fast SVM Library on GPUs and CPUs

Language:C++Apache-2.0020

deepnog

Protein orthologous group assignment with deep learning

Language:PythonBSD-3-Clause010

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

Language:PythonAGPL-3.0010

hpc-python

Python in High Performance Computing

Language:PythonNOASSERTION010

Liftoff

An accurate GFF3/GTF lift over pipeline

Language:PythonGPL-3.0010

phenotrex

Microbial Phenotype Prediction, re-implemented with Python 3.7 and scikit-learn

Language:PythonNOASSERTION010

puffinn

Parameterless and Universal FInding of Nearest Neighbors

Language:C++MIT020

puffinn-test

Test puffinn LSH library

Language:PythonBSD-3-Clause020

pyfaidx

Efficient pythonic random access to fasta subsequences

Language:PythonNOASSERTION020

pytorch.github.io

The website for PyTorch

Language:HTMLBSD-3-Clause000

SALSA

SALSA: A tool to scaffold long read assemblies with Hi-C data

Language:PythonMIT010

scikit-learn

scikit-learn: machine learning in Python

Language:PythonNOASSERTION010

scipy

Scipy library main repository

Language:PythonBSD-3-Clause020

scipy-articles

Publications about Scipy

Language:TeXNOASSERTION000

selene

a framework for training sequence-level deep learning networks

Language:Jupyter NotebookBSD-3-Clause-Clear020

tutorials

PyTorch tutorials.

BSD-3-Clause000

UDSMProt

Protein sequence classification with self-supervised pretraining

Language:PythonNOASSERTION010