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WMS Endpoints respond with 404 when using unidata/thredds-docker:4.6.20-SNAPSHOT

swainn opened this issue · comments

commented

To report a non-security related issue, please provide:

  • the version of the software with which you are encountering an issue

unidata/thredds-docker:4.6.20-SNAPSHOT

  • environmental information (i.e. Operating System, compiler info, java version, python version, etc.)

Docker:

Client: Docker Engine - Community
 Version:           19.03.8
 API version:       1.40
 Go version:        go1.12.17
 Git commit:        afacb8b7f0
 Built:             Wed Mar 11 01:25:46 2020
 OS/Arch:           linux/amd64
 Experimental:      false

Server: Docker Engine - Community
 Engine:
  Version:          19.03.8
  API version:      1.40 (minimum version 1.12)
  Go version:       go1.12.17
  Git commit:       afacb8b7f0
  Built:            Wed Mar 11 01:24:19 2020
  OS/Arch:          linux/amd64
  Experimental:     false
 containerd:
  Version:          1.2.13
  GitCommit:        7ad184331fa3e55e52b890ea95e65ba581ae3429
 runc:
  Version:          1.0.0-rc10
  GitCommit:        dc9208a3303feef5b3839f4323d9beb36df0a9dd
 docker-init:
  Version:          0.18.0
  GitCommit:        fec3683
  • a description of the issue with the steps needed to reproduce it

Description:
WMS Endpoints respond with 404 when using unidata/thredds-docker:4.6.20-SNAPSHOT. This issue does not occur if we revert back to the previous version we were using: unidata/thredds-docker:4.6.16.1. No changes were made to the catalog configurations or data.

Reproduce:
This dataset is accessible and should support WMS:
https://tethys-staging.byu.edu/thredds/catalog/data/groundwater/4/Cordillera_Central/catalog.html?dataset=testDatasetScan/groundwater/4/Cordillera_Central/Cordillera_Central_2_drinterpolation_1637544972.6278963.nc

However, the GetCapabilities requests respond with 404:
https://tethys-staging.byu.edu/thredds/wms/data/groundwater/4/Cordillera_Central/Cordillera_Central_2_drinterpolation_1637544972.6278963.nc?service=WMS&version=1.3.0&request=GetCapabilities

GetMap requests also respond with 404:
https://tethys-staging.byu.edu/thredds/wms/data/groundwater/4/Cordillera_Central/Cordillera_Central_2_drinterpolation_1637544972.6278963.nc?service=WMS&request=GetMap&layers=tsvalue&styles=boxfill%2Frainbow&format=image%2Fpng&transparent=true&version=1.3.0&colorscalerange=-119.935%2C1043.237&time=1996-12-31T00%3A00%3A00.000Z&width=256&height=256&crs=EPSG%3A3857&bbox=-7983694.730330091,2035059.4410645345,-7827151.69640205,2191602.474992575

Note: I will likely revert back to 4.6.16.1 until this issue is resolved, so the links above may function fine.

The following error is logged when this happens:

SEVERE [http-nio-8080-exec-22] org.apache.catalina.core.ApplicationContext.log Servlet.init() for servlet [wms] threw exception
        org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'wmsController' defined in ServletContext resource [/WEB-INF/wms-servlet.xml]: Invocation of init method failed; nested exception is thredds.server.wms.config.WmsConfigException: org.jdom2.input.JDOMParseException: Error on line 1 of document http://www.unidata.ucar.edu/schemas/thredds/dtd/ncwms/wmsConfig.dtd: The markup declarations contained or pointed to by the document type declaration must be well-formed.
                at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1619)
                at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:553)
                at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481)
                at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312)
                at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
                at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308)
                at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
                at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:756)
                at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:867)
                at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:542)
                at org.springframework.web.servlet.FrameworkServlet.configureAndRefreshWebApplicationContext(FrameworkServlet.java:668)
                at org.springframework.web.servlet.FrameworkServlet.createWebApplicationContext(FrameworkServlet.java:634)
                at org.springframework.web.servlet.FrameworkServlet.createWebApplicationContext(FrameworkServlet.java:682)
                at org.springframework.web.servlet.FrameworkServlet.initWebApplicationContext(FrameworkServlet.java:553)
                at org.springframework.web.servlet.FrameworkServlet.initServletBean(FrameworkServlet.java:494)
                at org.springframework.web.servlet.HttpServletBean.init(HttpServletBean.java:171)
                at javax.servlet.GenericServlet.init(GenericServlet.java:158)
                at org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1173)
                at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1118)
                at org.apache.catalina.core.StandardWrapper.allocate(StandardWrapper.java:789)
                at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:128)
                at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:97)
                at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:542)
                at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:135)
                at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:81)
                at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:698)
                at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:78)
                at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:364)
                at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:624)
                at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65)
                at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:831)
                at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1673)
                at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
                at org.apache.tomcat.util.threads.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1191)
                at org.apache.tomcat.util.threads.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:659)
                at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
                at java.lang.Thread.run(Thread.java:748)
        Caused by: thredds.server.wms.config.WmsConfigException: org.jdom2.input.JDOMParseException: Error on line 1 of document http://www.unidata.ucar.edu/schemas/thredds/dtd/ncwms/wmsConfig.dtd: The markup declarations contained or pointed to by the document type declaration must be well-formed.
                at thredds.server.wms.config.WmsDetailedConfig.fromInputStream(WmsDetailedConfig.java:130)
                at thredds.server.wms.config.WmsDetailedConfig.fromFile(WmsDetailedConfig.java:80)
                at thredds.server.wms.ThreddsWmsController.init(ThreddsWmsController.java:121)
                at sun.reflect.GeneratedMethodAccessor68.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1748)
                at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1685)
                at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1615)
                ... 36 more
        Caused by: org.jdom2.input.JDOMParseException: Error on line 1 of document http://www.unidata.ucar.edu/schemas/thredds/dtd/ncwms/wmsConfig.dtd: The markup declarations contained or pointed to by the document type declaration must be well-formed.
                at org.jdom2.input.sax.SAXBuilderEngine.build(SAXBuilderEngine.java:228)
                at org.jdom2.input.sax.SAXBuilderEngine.build(SAXBuilderEngine.java:253)
                at org.jdom2.input.SAXBuilder.build(SAXBuilder.java:1091)
                at thredds.server.wms.config.WmsDetailedConfig.fromInputStream(WmsDetailedConfig.java:97)
                ... 44 more
        Caused by: org.xml.sax.SAXParseException; systemId: http://www.unidata.ucar.edu/schemas/thredds/dtd/ncwms/wmsConfig.dtd; lineNumber: 1; columnNumber: 3; The markup declarations contained or pointed to by the document type declaration must be well-formed.
                at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.createSAXParseException(ErrorHandlerWrapper.java:203)
                at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.fatalError(ErrorHandlerWrapper.java:177)
                at com.sun.org.apache.xerces.internal.impl.XMLErrorReporter.reportError(XMLErrorReporter.java:400)
                at com.sun.org.apache.xerces.internal.impl.XMLErrorReporter.reportError(XMLErrorReporter.java:327)
                at com.sun.org.apache.xerces.internal.impl.XMLScanner.reportFatalError(XMLScanner.java:1473)
                at com.sun.org.apache.xerces.internal.impl.XMLDTDScannerImpl.scanDecls(XMLDTDScannerImpl.java:2038)
                at com.sun.org.apache.xerces.internal.impl.XMLDTDScannerImpl.scanDTDExternalSubset(XMLDTDScannerImpl.java:307)
                at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl$DTDDriver.dispatch(XMLDocumentScannerImpl.java:1174)
                at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl$DTDDriver.next(XMLDocumentScannerImpl.java:1045)
                at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl$PrologDriver.next(XMLDocumentScannerImpl.java:959)
                at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:602)
                at com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:112)
                at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:505)
                at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:842)
                at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:771)
                at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:141)
                at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1213)
                at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:643)
                at org.jdom2.input.sax.SAXBuilderEngine.build(SAXBuilderEngine.java:217)
                ... 47 more
13-Jan-2022 20:44:40.040 SEVERE [http-nio-8080-exec-22] org.apache.catalina.core.StandardWrapperValve.invoke Allocate exception for servlet [wms]
        org.xml.sax.SAXParseException; systemId: http://www.unidata.ucar.edu/schemas/thredds/dtd/ncwms/wmsConfig.dtd; lineNumber: 1; columnNumber: 3; The markup declarations contained or pointed to by the document type declaration must be well-formed.
                at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.createSAXParseException(ErrorHandlerWrapper.java:203)
                at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.fatalError(ErrorHandlerWrapper.java:177)
                at com.sun.org.apache.xerces.internal.impl.XMLErrorReporter.reportError(XMLErrorReporter.java:400)
                at com.sun.org.apache.xerces.internal.impl.XMLErrorReporter.reportError(XMLErrorReporter.java:327)
                at com.sun.org.apache.xerces.internal.impl.XMLScanner.reportFatalError(XMLScanner.java:1473)
                at com.sun.org.apache.xerces.internal.impl.XMLDTDScannerImpl.scanDecls(XMLDTDScannerImpl.java:2038)
                at com.sun.org.apache.xerces.internal.impl.XMLDTDScannerImpl.scanDTDExternalSubset(XMLDTDScannerImpl.java:307)
                at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl$DTDDriver.dispatch(XMLDocumentScannerImpl.java:1174)
                at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl$DTDDriver.next(XMLDocumentScannerImpl.java:1045)
                at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl$PrologDriver.next(XMLDocumentScannerImpl.java:959)
                at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:602)
                at com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:112)
                at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:505)
                at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:842)
                at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:771)
                at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:141)
                at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1213)
                at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:643)
                at org.jdom2.input.sax.SAXBuilderEngine.build(SAXBuilderEngine.java:217)
                at org.jdom2.input.sax.SAXBuilderEngine.build(SAXBuilderEngine.java:253)
                at org.jdom2.input.SAXBuilder.build(SAXBuilder.java:1091)
                at thredds.server.wms.config.WmsDetailedConfig.fromInputStream(WmsDetailedConfig.java:97)
                at thredds.server.wms.config.WmsDetailedConfig.fromFile(WmsDetailedConfig.java:80)
                at thredds.server.wms.ThreddsWmsController.init(ThreddsWmsController.java:121)
                at sun.reflect.GeneratedMethodAccessor68.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1748)
                at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1685)
                at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1615)
                at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:553)
                at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481)
                at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312)
                at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
                at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308)
                at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
                at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:756)
                at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:867)
                at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:542)
                at org.springframework.web.servlet.FrameworkServlet.configureAndRefreshWebApplicationContext(FrameworkServlet.java:668)
                at org.springframework.web.servlet.FrameworkServlet.createWebApplicationContext(FrameworkServlet.java:634)
                at org.springframework.web.servlet.FrameworkServlet.createWebApplicationContext(FrameworkServlet.java:682)
                at org.springframework.web.servlet.FrameworkServlet.initWebApplicationContext(FrameworkServlet.java:553)
                at org.springframework.web.servlet.FrameworkServlet.initServletBean(FrameworkServlet.java:494)
                at org.springframework.web.servlet.HttpServletBean.init(HttpServletBean.java:171)
                at javax.servlet.GenericServlet.init(GenericServlet.java:158)
                at org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1173)
                at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1118)
                at org.apache.catalina.core.StandardWrapper.allocate(StandardWrapper.java:789)
                at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:128)
                at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:97)
                at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:542)
                at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:135)
                at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:81)
                at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:698)
                at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:78)
                at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:364)
                at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:624)
                at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65)
                at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:831)
                at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1673)
                at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
                at org.apache.tomcat.util.threads.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1191)
                at org.apache.tomcat.util.threads.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:659)
                at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
                at java.lang.Thread.run(Thread.java:748)
commented

Hi @swainn - Try editing the content/thredds/wmsConfig.xml file and changing line 2.

I believe it is currently this

<!DOCTYPE wmsConfig SYSTEM "https://www.unidata.ucar.edu/schemas/thredds/dtd/ncwms/wmsConfig.dtd">

and should instead be

<!DOCTYPE wmsConfig SYSTEM "https://schemas.unidata.ucar.edu/thredds/dtd/ncwms/wmsConfig.dtd">

With TDS 4.6, I don't think you will even have to restart the TDS. A restart is needed for TDS 5.

If that doesn't work, we'll have to dig deeper. But I'm pretty sure that will work.

Cheers,

Ethan

commented

That did the trick. Thank you for your rapid response.