UGentBiomath / COVID19-Model

Compartmental SEIQRD model to model the effects of government policies on SARS-CoV-2 spread in Belgium. Macro-economic Input-Output model to assess the economic impact of sector closure and changes in consumption patterns. Quality-adjusted life-years model to assess the health economic impact of SARS-CoV-2.

UGentBiomath/COVID19-Model Issues

Windows path issues
Updated a year ago
time dependant functions not working for stratified parameters
Updated 2 years ago1
Calibrating model requires data with `date` as first index
Updated 2 years ago1
[Suggestion] allocating thetas and labels to stratified parameters for calibration is not quite intuitive
Updated 2 years ago
Problems installing `h5py` / importing `netCDF4`
Updated 2 years ago
`os.getcwd()` on Windows not the same as on Linux?
Updated 2 years ago
Multiprocessing for single function evaluation
Closed 2 years ago
Usage of `integrate` method with discrete solver (using stochastic model) confusing
Updated 4 years ago1
Building the docs locally: missing info in documentation
Updated 4 years ago4
Saving model output to NetCDF
Updated 4 years ago3
Integration of economic model into existing framework
Updated 4 years ago1
Require unit test for most basic spatial model
Updated 4 years ago
Why difference between `parameters_stratified_names` and `stratification`?
Closed 4 years ago1
[calibrate_stochastic.py] Particle Swarm Optimisation output stream to a text file
Closed 4 years ago
Test run failing
Closed 4 years ago
Unifying / generalizing the implementation of checkpoints / compliance (time-dependent parameters)
Closed 4 years ago3
Optimize the optimization
Closed 4 years ago1
Tryout refactoring model class
Closed 4 years ago10
[function realTimeScenario] Visualistation of uncertainty band on model prediction
Closed 4 years ago1
**Documentation: How to use the model**
Closed 4 years ago2
Discrete optimization
Updated 4 years ago1
xarray representation of model outputs
Closed 4 years ago10
Clarify figure of model dynamics
Closed 4 years ago3
Where to save calibrated parameters
Closed 4 years ago2
Issue templates: Contact information for non-code questions
Closed 4 years ago4
**Docs: Background**
Closed 4 years ago3
Data handling and documentation
Closed 4 years ago7
Exclude hardcoded refs to data files
Closed 4 years ago2
Docs, start to collaborate: repository layout
Closed 4 years ago2
Duplicate notebook SEIRSNetworkModel_demo
Closed 4 years ago3
function `get_COVID19_SEIRD_parameters` not working due to missing file
Closed 4 years ago3
Proposal to have output of the data loading functions as pandas DataFrame
Closed 4 years ago4
New names for package and models
Updated 4 years ago
sphinx build location depends on used command
Closed 4 years ago3
Building sphinx docs, local
Closed 4 years ago1
**Docs, Start to collaborate: python package**
Closed 4 years ago
**Start to collaborate: documentation website**
Closed 4 years ago
Binder not working for pull requests from forks (parked for now)
Updated 4 years ago3
Package/model not available in binder
Closed 4 years ago3
'ICU' is both parameter as well as variable name
Closed 4 years ago2
unclear purpose of the "templates" folder in notebooks folder
Closed 4 years ago4
Propose general layout for repository
Closed 4 years ago10
clarification on numpy docstirng
Closed 4 years ago2
Automate sphinx documentation build
Closed 4 years ago1
Binder not working
Closed 4 years ago1