Processsamples.py error
sg4640 opened this issue · comments
Hi, I'm getting this error message when running the third step of the tRAX pipeline. I also got this type of error when running the TestRun.bash script, so it can't just be my input files. Has anyone else had this issue? Bit of a newbie to tRNA analysis and these sort of pipelines.
It looks like the tRNA database creation failed, did that produce any error
messages?
…On Mon, Apr 26, 2021 at 11:15 AM sg4640 ***@***.***> wrote:
Hi, I'm getting this error message when running the third step of the tRAX
pipeline. I also got this type of error when running the TestRun.bash
script, so it can't just be my input files. Has anyone else had this issue?
Bit of a newbie to tRNA analysis and these sort of pipelines.
[image: Screen Shot 2021-04-26 at 2 12 24 PM]
<https://user-images.githubusercontent.com/68067388/116130708-8b2b2600-a699-11eb-8d9b-0618b63152c0.png>
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This is from the test data that comes with the package. I got this error:
OK not sure but it looks like bowtie2-build failed due to a lack of memory
on your machine, if you're running it on a laptop you might need to move
this to a server
…On Tue, Apr 27, 2021 at 10:58 AM sg4640 ***@***.***> wrote:
This is from the test data that comes with the package. I got this error:
[image: Screen Shot 2021-04-27 at 1 56 15 PM]
<https://user-images.githubusercontent.com/68067388/116289378-6f3e8780-a760-11eb-8f98-4222b08d1121.png>
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Thanks! I'll try that and let you know if I run into any other issues