Nabokov's starred repositories
ActivePathways
Integrative pathway enrichment analysis of multivariate omics data
clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
gatk4-germline-snps-indels
Workflows for germline short variant discovery with GATK4
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
crossmap-workflow
Workflow and script for converting genomic coordinates using MUMmer output and CrossMap
PopLDdecay
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
OrthoFinder
Phylogenetic orthology inference for comparative genomics
breed4biomass
Multi-omics data of forage grass hybrids.
popgen-notes
Population genetics notes
gpt_academic
为GPT/GLM等LLM大语言模型提供实用化交互接口,特别优化论文阅读/润色/写作体验,模块化设计,支持自定义快捷按钮&函数插件,支持Python和C++等项目剖析&自译解功能,PDF/LaTex论文翻译&总结功能,支持并行问询多种LLM模型,支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。
farmvibes-ai
FarmVibes.AI: Multi-Modal GeoSpatial ML Models for Agriculture and Sustainability
SoyDNGPNext
A deeplearning driving bioinformatic toolkit.