Sdamirsa

HappyTreeResearchFriends

Here I will store some learning contents, learning pathways, and opportunities so that I can re-use them. Happy Tree Research Friends is a group that I started three years ago with my mentee and friends.

MedQA-BBY

MedQA-but-better-yield (MedQA-BBY) is build on top of MedQA dataset but enriched with labels, as well as two correct options and one negative point option, and three 0 point options. The labels include:(1) question topic regarding system, discipline, and subspeciality, (2) token length, (3) Bloom taxonomy

AI-in-Med-Trend

Trend of AI in Medicine and GI

extract_telegram_contact_to_csv

This repo is created for other people looking to convert their telegram exported contacts to CSV (so they can import in in google account or elsewhere)

ParsBench-biomedical

This repository contains multiple-choice questions and real-world scenarios for benchmarking large language models in Persian (Farsi) and English. The content is designed to evaluate the performance and capabilities of various language models across these two languages.

3DFistFAKS

PanCanAID

Pancreas Cancer AI-Driven Diagnosis in CT scan and EUS Imaging: A protocol for an Observational Multicentric Ambispective Study

Tehran_COVID_Cohort

Code for data extraction and analysis of a COVID project with 10,000 participants (COVID-19 inpatients)

AI-and-Abdominal-CT-resources

Resources for people working on Artificial Intelligence (AI) and Machine Learning (ML) projects in computed tomography (CT) scan.

AntibioticResitance_Hpylori

Investigating Antibiotic Resistance to H.pylori using gene expression from whole genome sequence data with unsupervised and supervised methods

BariatricSurgery_Analysis

Code for statistical analysis and visualization of scientific project entitled "Benefit of Exercise after Laparoscopic Sleeve Gastrectomy Surgery: 4-Year Follow-up of Weight Regain and Glucose Profile"

COVID-19_Pregnancy

This code is used for analysis of a research project entitled "Radiologic and Clinical Features of COVID-19 Pneumonia in Pregnancy: A Comparison with Matched Non-Pregnant Control in Tehran, Iran."

drawio-github

Drawio GitHub Integration

ehran_covid_Large-Language-Models-vs-Classical-Machine-learning

Exminer

creating MCQs from your PDFs by leveraging LLMs.

GI-AI-EHR_AutoEvidenceUpdate_NLP

This code will automaticly update latest articles applying AI on EHR data in the field of GI.

LLM-VLM-in-Gastroenterology

Large Language Models (LLM), and Vision Language Models (VLM) performance in gastroenterology.

LLMs_in_GI

Papers, models, and datasets aiming at evaluation of Large Language Models (LLM) in gastroenterology

My_Full_stack_development_path

My_Saved_Codes

My saved codes

MyChatGPT

This is how I am using chatGPT without using their interface (through API).

no-code-app-for-GPT-research

No code streamlit app for running GPT models on excel file (and ground truth). This could be used for (1) generating unstructured output, or (2) structured output (for extraction or generating variables).

PanCanAID-SAM-Home

PanCanAID SAM Home

Sdamirsa

This is me

Sink_in_CT_Project

In this repor, I will share my codes during past three years wokring on a multi-institutional project on CT scan (PanCanAID).

Sinopharm_C19_Response_HemodyalsisPatients

Sinopharm Vaccine Respone in Hemodyalisis Patients.

Stapp_in_colonochartreview_v1.0_stable

Stapp_in_colonochartreview_v1.0_stable

Tehran_COVID_Cohort_LLMExperiment

telematics-agent-based-simulation

XNAT-OHIF_read-overlay-visualize-segmentation-file

This repo is a easy-to-use code which will read the segmentation file (.dcm) created by OHIF or XNAT, and overlay this with corresponding slice of corresponding series. Hope you can enjoy it.