partially initialized module 'cv2' has no attribute 'gapi_wip_gst_GStreamerPipeline'

[tenlives]

at 'image processing and registration start' step, it raises above error.
Is there a soultion? Thank you!

[tenlives]

/usr/bin/time -v singularity exec ${sif} register \
    -i ${imageTarFile} \
    -c ${iprFile} \
    -v ${outDir}/02.count/${SN}.raw.gef \
    -w True --core ${threads} \
    -o ${outDir}/03.register

When run this step, it raises above error. The SAW version is 7.0.

[KentLE]

This is generally caused by package conflicts in the system environment. I'm sorry that we have less relevant experience and you could try to reconstruct the conda environment.

[tenlives]

This is generally caused by package conflicts in the system environment. I'm sorry that we have less relevant experience and you could try to reconstruct the conda environment.

Thank for your advice! it works for me

[tenlives]

Whether it indicate that the imageRecordFile ipr file is invalid?

[KentLE]

It means the image did not pass QC in ImageStudio, you may need to do manual tissue segmentation in ImageStudio and manual registration in StereoMap, refer to 'Scripts/stereoPipeline_v7.0_manual_part1.sh' and 'Scripts/stereoPipeline_v7.0_manual_part2.sh' .

[tenlives]

It means the image did not pass QC in ImageStudio, you may need to do manual tissue segmentation in ImageStudio and manual registration in StereoMap, refer to 'Scripts/stereoPipeline_v7.0_manual_part1.sh' and 'Scripts/stereoPipeline_v7.0_manual_part2.sh' .

Thank you! It is very helpful.