SIJAE-WOO

plotsr

Tool to plot synteny and structural rearrangements between genomes

CNVpytor

a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads

cpulimit

CPU usage limiter for Linux

GangSTR

A tool for profiling long STRs from short reads

nextclade

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

nextclade_data

Datasets for https://github.com/nextstrain/nextclade

bioinformatics-coffee-hour

Short lessons from FAS Informatics coffee hour

tgg-viewer

A free, open-source web app for visualizing splice junctions, expression, and other sequencing data genome-wide using IGV.js

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

gdrive

Google Drive CLI Client

emg-toolkit

MGnify API toolkit

covariants

Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

alphafold

Open source code for AlphaFold.

RoseTTAFold

This package contains deep learning models and related scripts for RoseTTAFold

logomaker

Software for the visualization of sequence-function relationships

sample

Performs memory-efficient reservoir sampling on very large input files delimited by newlines

vaex

Out-of-Core hybrid Apache Arrow/NumPy DataFrame for Python, ML, visualization and exploration of big tabular data at a billion rows per second 🚀

lollipops

Lollipop-style mutation diagrams for annotating genetic variations.

I-PV

Interactive Protein Sequence VIsualization/Viewer - Interactive Circos

gatk-sv

A structural variation pipeline for short-read sequencing

pyvenn

Python module for plotting Venn diagrams of 2..6 sets

cell-2015

Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"

NGSCheckMate

Software program for checking sample matching for NGS data

CS231N_17_KOR_SUB

CS231N 2017 video subtitles translation project for Korean Computer Science students

Tensorflow_Tutorial

markdown-here

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

ML-From-Scratch

Machine Learning From Scratch. Bare bones NumPy implementations of machine learning models and algorithms with a focus on accessibility. Aims to cover everything from linear regression to deep learning.

r-sem

r-sem