Fraunhofer SCAI Bioinformatics Department

MultiGML

MultiGML

ExMed-BERT

MultiNODEs

STEP

Data and code for STEP (Siamese Twin deep sequence Embedding of Proteins) approach.

datastew

Python library for intelligent data stewardship using Large Language Model (LLM) embeddings

index

Intelligent data steward toolbox using Large Language Model embeddings for automated Data-Harmonization

PDataViewer

Parkinsons Disease cohort landscape visualization

tsnepad

AD & PD cohort variable distributions

EpilepsyOntology

Web-of-Clint

web of public health intelligence data tooling

ad-mapper

data-steward

Data Steward

helm-upgrade-actions

Template to automatically build & deploy services to Kubernetes (k8s) using helm and github actions

sam

Terminology management service

syndat

Synthetic data quality evaluation & visualization

tau-kg-benchmarking-GPT

Benchmarking the performance of GPT-based LLMs against human curated Tau KG from Human Brain Pharmacome (HBP)

adr-detection-with-knowledge-fusion

ADR Deteciton with Knowledge Fusion Approaches

bipolar-disorder-ontology

Bipolar Disorder Ontology

covid-NDD-comorbidity-NLP

This work aims to synthesize and analyze the growing body of literature connecting COVID-19 infections with potential long-term neurological impacts, particularly neurodegenerative processes.

MMPK-SciML

Official implementation of the paper Scientific Machine learning for predicting plasma concentrations in anti-cancer therapy

MultiNODEs_NewImplementation

MultiNODEs New Implementation

owl-tooling

Helpers for importing OWL files, reasoning over OWL files, etc.

PD-progression-types

tau-kg-extension-nlp

Extending the Tau subgraph within the pharmacome using NLP.

BiomarkerOntology

The Biomarker Ontology

causal-npi-effects

A causal machine learning framework to assess effects of non-pharmaceutical interventions on pandemic disease spread.

Dynamic_Ensemble

A Dynamic Ensemble Model for short-term Forecasting in Pandemic Situations

mirna-disease-association-detection

MiRNA-disease association detection through text mining methods.

service-template

zetomap

An AOP network visualizer and prediction tool for the ZET-O-MAP project.