download link is broken
RudoRoemer opened this issue · comments
As is shown below, the download link in the present advem version is broken/incomplete.
-Rudo
Your request for a PDB2Movie calculation has now finished execution. A download link is given below.
This link will normally remain active for 7 days but can also be removed by the system earlier. It is your
responsibility to start the download as soon as possible.
Your parameters are again appended below.
Please note that this service uses low priority compute cycles at the Scientific Computing Research Technology Platform
at the University of Warwick. The service is provided for free at the moment based on a low volume of such requests.
If you wish to use the service more often, please get in touch as explained on our PDB2Movie web pages.
If you use the results of this calculation in a commercial and/or academic output (such as a patent or a paper), please
remember to acknowledge our two papers
[A] "Rapid simulation of protein motion: merging flexibility, rigidity and normal mode analyses"
E. Jimenez-Roldan, R. Freedman, R. A. Römer, S. A. Wells
Physical Biology 9, 016008-12 (2012)
http://dx.doi.org/doi:10.1088/1478-3975/9/1/016008
[B] "The dynamics and flexibility of protein disulphide-isomerase (PDI): predictions of experimentally-observed domain motions"
R. A. Römer, S. A. Wells, J. E. Jimenez-Roldan, M. Bhattacharyya, S. Vishweshwara and R. B. Freedman
Proteins: Structure, Function and Bioinformatics 84, 1776-1785 (2016)
http://dx.doi.org/10.1002/prot.25159
Your request:
file: 3F8U_FH.pdb
python file used: 0
resolution: 1920
combi: 1920
multi: 1080
waters: 1
threed: 0
confs: 0
freq: 2000
step: 100
dstep: 3F8U_FH.pdb0
Keep list: 3F8U_FH.pdb1
Modes: 3F8U_FH.pdb2
Cutoffs: 3F8U_FH.pdb3
Date Submitted: 3F8U_FH.pdb4
Your User Reference Code: 3F8U_FH.pdb5
Download Link: /download/1aae6b8133940faf00ddc5afbb27016771de71f.tar.gz
PS: It would be good if the files would also include a label whether they were generated by the production or the text server, i.e. advid or avdem. Maybe we use the pdb2movie and pdb2movie-test labels for that (so not to expose the advem/vid names to the public)?
The reason for the strange output is because I am currently working on it right now. I believe everything works except for the user's secret code, a small ammendment, then I shall start work on the database on advid and then make my pull request. The delete functionality for currently running scripts now works successfully though I will change front end to only show history or current requests soon.
Now added "http://" and domain before download link. CSC seems very busy at the moment, so my requests to test probably won't go through until over-night. Once this has been clarified, I will close this issue.
This has been fixed on the test server and is working in my latest pull request. I will close this bug.