River366

visium_analysis

scCAD

Cluster decomposition-based Anomaly Detection method (scCAD) is used to effectively identify rare cell types in scRNA-seq data.

SeuratExtend

scSemiProfiler

A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative model.

RNAseqStat2

alphapept

A modular, python-based framework for mass spectrometry. Powered by nbdev.

rustdesk

An open-source remote desktop application designed for self-hosting, as an alternative to TeamViewer.

IlluminaHumanMethylationEPICv2manifest

sandphoto

Layout ID/VISA photos in a single 6-inch photo 证件照片排版在线生成器 - 在一张6寸的照片上排版多张证件照

SpatialDDLS

Deconvolution of spatial transcriptomics data based on Deep Learning

awesome-prompts

Curated list of chatgpt prompts from the top-rated GPTs in the GPTs Store. Prompt Engineering, prompt attack & prompt protect. Advanced Prompt Engineering papers.

Xenium_benchmarking

Code used to benchmark Xenium

Iniquitate

Analysis of imbalanced data and its impacts in a scRNA-seq integration setting

spatial_brain_cancer

tapioca

a framework for predicting global protein-protein interaction networks from dynamic mass spec data

TFvelo

ilus

A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.

CytoCommunity

The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains

DeepScena

Deep clustering of scRNA-seq data

Drop-seq

Java tools for analyzing Drop-seq data

scPerturb

scPerturb: A resource and a python/R tool for single-cell perturbation data

CellOracle

This is the alpha version of the CellOracle package

CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

dittoSeq

Color blindness friendly visualization of single-cell and bulk RNA-sequencing data

tidyproteomics

An S3 data object and framework for common quantitative proteomic analyses

tidyproteomics-interactive

Interactive Shiny application for tidyproteomics

CEFCON

Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data

MediaCreationTool.bat

Universal MCT wrapper script for all Windows 10/11 versions from 1507 to 21H2!

entrain

Entrain: Predicting Environmental Regulators of Differentiation Trajectories

rarity

Implementarion of Rarity: Discovering rare cell populations from single-cell imaging data