We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ribo-seq data. The workflow performs all required pre-processing steps and quality control. Importantly, HRIBO outputs annotation-independent ORF predictions based on two complementary prokaryotic-focused tools, and integrates them with additional computed features. This facilitates both the rapid discovery of ORFs and their prioritization for functional characterization.
RickGelhausen opened this issue · comments
the same seems to be true for the taxonomy I assume, as we do not use sortmeRNA anymore
maybe we should even allow the fastq filepath to be set by the user, instead of enforcing it.
ok this seems to be possible already, using the sample.tsv file
Custom paths to sample files are now possible