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RickGelhausen / HRIBO

We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ribo-seq data. The workflow performs all required pre-processing steps and quality control. Importantly, HRIBO outputs annotation-independent ORF predictions based on two complementary prokaryotic-focused tools, and integrates them with additional computed features. This facilitates both the rapid discovery of ORFs and their prioritization for functional characterization.

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Replace gffread

RickGelhausen opened this issue · comments

commented
  • currently gffread is used for the generation of a stable gtf/gff file for further processing
  • gffread requires some post-processing
  • it might be easier to combine everything into one script
commented

Done

commented

Might require some refinement.

  • which features are needed ?
  • misc_rna ?
  • mRNA ?
commented

This has been exchanged a few versions ago.