We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ribo-seq data. The workflow performs all required pre-processing steps and quality control. Importantly, HRIBO outputs annotation-independent ORF predictions based on two complementary prokaryotic-focused tools, and integrates them with additional computed features. This facilitates both the rapid discovery of ORFs and their prioritization for functional characterization.
RickGelhausen opened this issue · comments
"Metagene analysis for the above single nt mapping (around the start
and stop codon) as an Excel file that we can use to make our own
graphs. This is most important for Retapamulin/Tetracycline, to see if
there is enrichment at -15, 0, and +15 nt after drug treatment." - Sarah Svensson
Finalized with 11eea44