Feng Ju's repositories
Co-occurrence_Network_Analysis
R and python scripts for correlation-based network analysis
Metagenomics
Scripts for metagenomics and next generation sequencing data analysis
Metagenomics-workshop-on-euler
A workshop for microbial metagenomics and bioinformatics practice on the euler server of ETH Zurich
Metatranscriptomics
Scripts used for the calculation of quantitative transcript metrics TPM and RPKM
Fasta_Tools
Python scripts for the analysis of fasta files generated from DNA sequencing
HMM_Tools
This project shares scripts for processing outputs from biosequence analysis using profile hidden Markov models (HMM)
nlp-beginner
NLP上手教程
Orthology-with-UBLAST
Workflow for Orthology analysis using UBLAST (faster, more sensitive than BLAST) and Reciprocal Best Hits
Pairwise_Alignment
pairwise alignment of DNA or protein sequences using biopython
pbspro
An HPC workload manager and job scheduler for desktops, clusters, and clouds.
sickle
Windowed Adaptive Trimming for fastq files using quality
tensorflow-mnist-tutorial
Sample code for "Tensorflow and deep learning, without a PhD" presentation and code lab.