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Rekyt / taxo_harmonization

:notebook: Companion code for Grenié et al. 2022 MEE "Harmonizing taxon names in biodiversity data: a review of tools, databases, and best practices" preprint: 10.32942/osf.io/e3qnz

Home Page:https://doi.org/10.1111/2041-210X.13802

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Choosing a network plot style

AlbanSagouis opened this issue · comments

commented

We have the choice between 2 styles for package and database networks:

  • keeping all packages (or databases) on-screen at all time and plotting only vertices between selected packages (or databases)
  • showing only selected packages (or databases) and the vertices between them, if any. If there are no vertices between selected packages (or databases), the current version of the app (0de3369) fails to plot the packages (or databases).
commented

To make things a little easier to read we could keep all networks complete but use an interactive network package such as visNetwork so that the users can navigate the links.

commented

Thanks for the recommendation.
Commit 9e3d1c7 added basic visNetwork implementation. Without the ggplot2 layer that was on top of the igraphs we used before, the visNeworks lack labels but that will come

commented

This has been fixed by 9853b8a