RabadanLab / arcasHLA

Fast and accurate in silico inference of HLA genotypes from RNA-seq

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Bug report for the `run_command` function in `arcas_utilities.py`

naity2 opened this issue · comments

Hi Authors,

I'm trying to run arcasHLA customize with a tsv file but am facing the following bug:

The line 355 of customize.py calls run_command(command). However, since the resolution parameter has a int type, the line 82, command = ' '.join(command), of arcas_utilities.py will cause TypeError: sequence item 11: expected str instance, int found.

I was wondering if you could help fix this bug?

Thanks very much!

Dear Developers,
I also encountered the same problem. Is there any way to fix this bug?

Thanks for your help!