RMORSEcode

erddap

ERDDAP is a scientific data server that gives users a simple, consistent way to download subsets of gridded and tabular scientific datasets in common file formats and make graphs and maps. ERDDAP is a Free and Open Source (Apache and Apache-like) Java Servlet from NOAA NMFS SWFSC Environmental Research Division (ERD).

awesome-erddap

A curated list of awesome Erddap projects and deployments

rollo_scripts

Shiny_Desktop_App

Deploy your R Shiny app(s) locally on Windows

oyster-filtration-calculator

Mapping Ocean Wealth oyster filtration calculator

rfishbase

R interface to the fishbase.org database

Natural-Mortality-Tool

nmfs-connect

Resources and issue tracker for the NMFS posit connect instance.

starve

An R package for analyzing spatio-temporal point-referenced data.

NCRMP_benthics

The ncrmp.benthic.analysis package is designed to use benthic coral reef data collected from the Atlantic regions of NOAA's National Coral Reef Monitoring Program (NCRMP) to compute summary statistics from the site to the regional level. For more information on NCRMP, visit https://www.coris.noaa.gov/monitoring/.

codrt_tor1

A Canadian repo which is not owned or managed by anyone on US soil.

survdat

https://noaa-edab.github.io/survdat/

SDMTools

:exclamation: This is a read-only mirror of the CRAN R package repository. SDMTools — Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises. Homepage: http://www.rforge.net/SDMTools/

regimeshifts

:package: R package providing simulations and data from ecological regime shifts

biomod2

BIOMOD is a computer platform for ensemble forecasting of species distributions, enabling the treatment of a range of methodological uncertainties in models and the examination of species-environment relationships.

rstars

rstars is the R package of the Sequential T-test Analysis of Regime Shifts developed by Rodionov (2004) and then implemented in R language by Luca Stirnimann (in collaboration with Alessandra Conversi and Simone Marini: Detection of regime shifts in the environment: testing “STARS” using synthetic and observed time series -https://doi.org/10.1093/icesjms/fsz148).

pyifcb

IFCB data system, generation 2

JPSS_Phytoplankton

Repository for the JPSS PGRR Project - Optimization of phytoplankton functional type algorithms for VIIRS ocean color data in the Northeast U.S. Continental Shelf Ecosystem

soapcheckr

Test that a soap film smoother boundary makes sense before running the model...

EcoCast_Operationalization

Code library to make operational EcoCast - a dynamic ocean management tool for fisheries bycatch

SDM_tutorial

This is a half day exercise in species distribution modeling for attendees at NSAW.

rrtools

rrtools: Tools for Writing Reproducible Research in R

Mar.datawrangling

A suite of tools for extracting, filtering and aggregating data from the Maritimes fisheries science databases

romslab

Suite of python classes, functions and scripts to work with ROMS setup, initialization and visualization

romstools

A variety of tools for plotting and analysing output from the Regional Ocean Model (ROMS)

ecodata

A data package for reporting on Northeast Continental Shelf ecosystem status and trends.

FishLife

Estimate fish traits for all marine fish species globally

xgcm

python package for analyzing general circulation model output data

eSDM

A user-friendly spatial tool with a web-based interface that allows users to import SDM layers and create and explore ensemble predictions to inform management and explore spatial uncertainties

PyFerret

The PyFerret program and Python module from NOAA/PMEL