About the installation

[Zhen-Hao Guo]

I have installed dgl-cu11 0.7.2. When I installed pygcl, I was prompted with "error: no matching distribution found for DGL > = 0.7 (from pygcl)". Do I have to install DGL without CUDA?

[Yichen Xu]

Could you paste the result of pip list | grep dgl in your environment?

[Zhen-Hao Guo]

I don't know what you mean. Is this?
Package Version

---

absl-py 0.15.0
aiohttp 3.7.4.post0
alabaster 0.7.12
aliyun-python-sdk-core 2.13.35
aliyun-python-sdk-kms 2.15.0
anaconda-client 1.7.2
anaconda-navigator 1.10.0
anaconda-project 0.8.3
anndata 0.7.6
annoy 1.17.0
argh 0.26.2
argon2-cffi 20.1.0
asn1crypto 1.4.0
astroid 2.4.2
astropy 4.0.2
async-generator 1.10
async-timeout 3.0.1
atomicwrites 1.4.0
attrs 20.3.0
autopep8 1.5.4
Babel 2.8.1
backcall 0.2.0
backports.functools-lru-cache 1.6.1
backports.shutil-get-terminal-size 1.0.0
backports.tempfile 1.0
backports.weakref 1.0.post1
backports.zoneinfo 0.2.1
bbknn 1.5.1
bcrypt 3.2.0
beautifulsoup4 4.9.3
bitarray 1.6.1
bkcharts 0.2
bleach 3.2.1
bokeh 2.2.3
boto 2.49.0
Bottleneck 1.3.2
brotlipy 0.7.0
cachetools 4.2.4
captum 0.4.1
certifi 2021.5.30
cffi 1.14.3
chardet 3.0.4
charset-normalizer 2.0.6
click 8.0.1
cloudpickle 1.6.0
clyent 1.2.2
colorama 0.4.4
commonmark 0.9.1
comtypes 1.1.7
conda 4.10.3
conda-build 3.20.5
conda-package-handling 1.7.2
conda-verify 3.4.2
contextlib2 0.6.0.post1
crcmod 1.7
cryptography 3.1.1
cycler 0.10.0
Cython 0.29.21
cytoolz 0.11.0
dask 2.30.0
decorator 4.4.2
defusedxml 0.6.0
dgl-cu111 0.7.2
diff-match-patch 20200713
distributed 2.30.1
docrep 0.3.2
docutils 0.16
dunamai 1.6.0
entrypoints 0.3
et-xmlfile 1.0.1
fastcache 1.1.0
fbpca 1.0
filelock 3.3.0
flake8 3.8.4
Flask 1.1.2
fsspec 2021.10.1
future 0.18.2
geosketch 1.2
get-version 3.5
gevent 20.9.0
glob2 0.7
google-auth 2.3.0
google-auth-oauthlib 0.4.6
googledrivedownloader 0.4
greenlet 0.4.17
grpcio 1.41.0
h5py 2.10.0
harmonypy 0.0.5
HeapDict 1.0.1
html5lib 1.1
huggingface-hub 0.0.18
idna 3.2
imageio 2.9.0
imagesize 1.2.0
importlib-metadata 2.0.0
iniconfig 1.1.1
intervaltree 2.1.0
ipdb 0.13.9
ipykernel 5.3.4
ipython 7.19.0
ipython-genutils 0.2.0
ipywidgets 7.5.1
isodate 0.6.0
isort 5.6.4
itsdangerous 1.1.0
jdcal 1.4.1
jedi 0.17.1
Jinja2 2.11.2
jmespath 0.10.0
joblib 1.0.1
json5 0.9.5
jsonschema 3.2.0
jupyter 1.0.0
jupyter-client 6.1.7
jupyter-console 6.2.0
jupyter-contrib-core 0.3.3
jupyter-contrib-nbextensions 0.5.1
jupyter-core 4.6.3
jupyter-highlight-selected-word 0.2.0
jupyter-latex-envs 1.4.6
jupyter-nbextensions-configurator 0.4.1
jupyterlab 2.2.6
jupyterlab-pygments 0.1.2
jupyterlab-server 1.2.0
keyring 21.4.0
kiwisolver 1.3.0
lazy-object-proxy 1.4.3
legacy-api-wrap 1.2
leidenalg 0.8.7
libarchive-c 2.9
littleutils 0.2.2
llvmlite 0.34.0
locket 0.2.0
loompy 3.0.6
louvain 0.7.0
lxml 4.6.1
Markdown 3.3.4
MarkupSafe 1.1.1
matplotlib 3.3.2
mccabe 0.6.1
menuinst 1.4.16
mistune 0.8.4
mkl-fft 1.2.0
mkl-random 1.1.1
mkl-service 2.3.0
mock 4.0.2
more-itertools 8.6.0
mpmath 1.1.0
msgpack 1.0.0
multidict 5.2.0
multipledispatch 0.6.0
NaiveDE 1.2.0
natsort 7.1.1
navigator-updater 0.2.1
nbclient 0.5.1
nbconvert 6.0.7
nbformat 5.0.8
nest-asyncio 1.4.2
networkx 2.5
nose 1.3.7
notebook 6.1.4
numba 0.51.2
numexpr 2.7.1
numpy 1.21.2
numpy-groupies 0.9.14
numpydoc 1.1.0
oauthlib 3.1.1
ogb 1.3.2
olefile 0.46
openpyxl 3.0.5
opt-einsum 3.3.0
oss2 2.15.0
outdated 0.2.1
packaging 21.0
pandas 1.4.1
pandocfilters 1.4.3
paramiko 2.7.2
parso 0.7.0
partd 1.1.0
path 15.0.0
pathlib2 2.3.5
pathtools 0.1.2
patsy 0.5.1
pep8 1.7.1
pexpect 4.8.0
pickleshare 0.7.5
Pillow 8.0.1
pip 20.2.4
pkginfo 1.6.1
pluggy 0.13.1
ply 3.11
prometheus-client 0.8.0
prompt-toolkit 3.0.8
protobuf 3.19.0
psutil 5.7.2
py 1.9.0
pyasn1 0.4.8
pyasn1-modules 0.2.8
pycodestyle 2.6.0
pycosat 0.6.3
pycparser 2.20
pycryptodome 3.12.0
pycurl 7.43.0.6
pyDeprecate 0.3.0
pydocstyle 5.1.1
pyflakes 2.2.0
Pygments 2.7.2
pylint 2.6.0
PyNaCl 1.4.0
pynndescent 0.5.4
pyodbc 4.0.0-unsupported
pyOpenSSL 19.1.0
pyparsing 2.4.7
pyreadline 2.1
pyreadr 0.4.4
pyro-api 0.1.2
pyro-ppl 1.7.0
pyrsistent 0.17.3
PySocks 1.7.1
pytest 0.0.0
python-dateutil 2.8.1
python-igraph 0.9.6
python-jsonrpc-server 0.4.0
python-language-server 0.35.1
pytorch-lightning 1.3.8
pytz 2020.1
pytz-deprecation-shim 0.1.0.post0
PyWavelets 1.1.1
pywin32 227
pywin32-ctypes 0.2.0
pywinpty 0.5.7
PyYAML 5.4.1
pyzmq 19.0.2
QDarkStyle 2.8.1
QtAwesome 1.0.1
qtconsole 4.7.7
QtPy 1.9.0
rdflib 6.0.1
regex 2021.9.30
requests 2.26.0
requests-oauthlib 1.3.0
rich 10.11.0
rope 0.18.0
rpy2 3.4.5
rsa 4.7.2
Rtree 0.9.4
ruamel-yaml 0.15.87
ruamel.yaml 0.17.16
ruamel.yaml.clib 0.2.6
sacremoses 0.0.46
scanorama 1.7.1
scanpy 1.8.0
scETM 0.5.0
scikit-image 0.17.2
scikit-learn 0.23.2
scipy 1.5.2
scvelo 0.2.4
scvi-tools 0.14.3
seaborn 0.11.0
Send2Trash 1.5.0
setuptools 58.1.0
setuptools-scm 6.3.2
simplegeneric 0.8.1
sinfo 0.3.4
singledispatch 3.4.0.3
sip 4.19.13
six 1.16.0
sklearn 0.0
snowballstemmer 2.0.0
sortedcollections 1.2.1
sortedcontainers 2.2.2
soupsieve 2.0.1
SpatialDE 1.1.3
Sphinx 3.2.1
sphinxcontrib-applehelp 1.0.2
sphinxcontrib-devhelp 1.0.2
sphinxcontrib-htmlhelp 1.0.3
sphinxcontrib-jsmath 1.0.1
sphinxcontrib-qthelp 1.0.3
sphinxcontrib-serializinghtml 1.1.4
sphinxcontrib-websupport 1.2.4
spyder 4.1.5
spyder-kernels 1.9.4
SQLAlchemy 1.3.20
statsmodels 0.12.0
stdlib-list 0.8.0
sympy 1.6.2
tables 3.6.1
tabulate 0.8.9
tblib 1.7.0
tensorboard 2.7.0
tensorboard-data-server 0.6.1
tensorboard-plugin-wit 1.8.0
tensorboardX 2.4.1
terminado 0.9.1
testpath 0.4.4
texttable 1.6.4
threadpoolctl 2.1.0
tifffile 2020.10.1
timm 0.4.12
tokenizers 0.10.3
toml 0.10.2
tomli 1.2.1
toolz 0.11.1
torch 1.10.2+cu113
torch-cluster 1.5.9
torch-geometric 2.0.2
torch-scatter 2.0.8
torch-sparse 0.6.12
torch-spline-conv 1.2.1
torchaudio 0.10.2+cu113
torchmetrics 0.6.0
torchvision 0.11.3+cu113
tornado 6.0.4
tqdm 4.62.3
traitlets 5.0.5
transformers 4.11.2
typing-extensions 3.10.0.2
tzdata 2021.5
tzlocal 4.1
ujson 4.0.1
umap-learn 0.4.6
unicodecsv 0.14.1
urllib3 1.26.7
watchdog 0.10.3
wcwidth 0.2.5
webencodings 0.5.1
Werkzeug 1.0.1
wheel 0.35.1
widgetsnbextension 3.5.1
win-inet-pton 1.1.0
win-unicode-console 0.5
wincertstore 0.2
wrapt 1.11.2
xlrd 1.2.0
XlsxWriter 1.3.7
xlwings 0.20.8
xlwt 1.3.0
xmltodict 0.12.0
yacs 0.1.8
yapf 0.30.0
yarl 1.7.0
zepid 0.9.0
zict 2.0.0
zipp 3.4.0
zope.event 4.5.0
zope.interface 5.1.2

[Zhen-Hao Guo]

Could you paste the result of pip list | grep dgl in your environment?

Do you need it? Thanks!

[Yichen Xu]

Please install dgl with conda.

[Zhen-Hao Guo]

Please install dgl with conda.

Whether I use pip DGL or conda DGL, it reminds me that I need the version of DGL > = 0.7. I tried dgl-cu111 0.7.2 and dgl-cu111 0.8.0 post1。

After I delete DGL > = 0.7 in "setup.cfg" and install it. It works but an error occurs when importing GCL, specifically from torch_ Spark import sparsetensor, coalesce, I'd like to know your torch_sparse version.

thank you!

[Zhen-Hao Guo]

Please install dgl with conda.

Specifically,

Traceback (most recent call last):
File "J:/project/script.py", line 14, in
import GCL
File "", line 991, in _find_and_load
File "", line 975, in _find_and_load_unlocked
File "", line 655, in _load_unlocked
File "", line 618, in load_backward_compatible
File "", line 259, in load_module
File "C:\Users\10360\anaconda3\lib\site-packages\pygcl-0.1.1-py3.8.egg\GCL_init.py", line 2, in
# @author: Xingyan Liu
File "", line 991, in _find_and_load
File "", line 975, in _find_and_load_unlocked
File "", line 655, in _load_unlocked
File "", line 618, in load_backward_compatible
File "", line 259, in load_module
File "C:\Users\10360\anaconda3\lib\site-packages\pygcl-0.1.1-py3.8.egg\GCL\augmentors_init.py", line 3, in

File "", line 991, in _find_and_load
File "", line 975, in _find_and_load_unlocked
File "", line 655, in _load_unlocked
File "", line 618, in _load_backward_compatible
File "", line 259, in load_module
File "C:\Users\10360\anaconda3\lib\site-packages\pygcl-0.1.1-py3.8.egg\GCL\augmentors\rw_sampling.py", line 2, in
File "", line 991, in _find_and_load
File "", line 975, in _find_and_load_unlocked
File "", line 655, in load_unlocked
File "", line 618, in load_backward_compatible
File "", line 259, in load_module
File "C:\Users\10360\anaconda3\lib\site-packages\pygcl-0.1.1-py3.8.egg\GCL\augmentors\functional.py", line 7, in
File "C:\Users\10360\anaconda3\lib\site-packages\torch_sparse_init.py", line 14, in
torch.ops.load_library(importlib.machinery.PathFinder().find_spec(
File "C:\Users\10360\anaconda3\lib\site-packages\torch_ops.py", line 110, in load_library
ctypes.CDLL(path)
File "C:\Users\10360\anaconda3\lib\ctypes_init.py", line 381, in init
self._handle = _dlopen(self._name, mode)
OSError: [WinError 127] 找不到指定的程序。

Process finished with exit code 1

[Zhen-Hao Guo]

Please install dgl with conda.

All questions have been resolved.
I update pytorch, which results a wrong vision of torch_gemotric.
Thx!

[Yanqiao ZHU]

Glad to see it has been resolved! Feel free to reach out if any other problems occur.