PennLINC / qsiprep

Preprocessing of diffusion MRI

http://qsiprep.readthedocs.io

PennLINC/qsiprep Issues

Method section in html report is not reporting intramodal template
Updated 2 days ago
Look into more recent synths
Updated 6 days ago
Upsampling is introducing artifact
Updated 15 days ago
Preprocessing multi-session anat data
Updated 19 days ago4
top of brain cut after preprocessing using version 0.22.0
Updated 19 days ago5
write out a json sidecar for the merged, preprocessed dwi file
Updated 24 days ago
[CI] Check into circleci performance
Closed a month ago1
Use nireports for report generation
Closed a month ago
Drop internal copies of templates in favor of re-orienting TemplateFlow templates
Closed a month ago
EDDY_CUDA Failure: GPU can only use 1 CPU thread
Closed a month ago4
Replace hyperlinks with BibTeX references
Updated a month ago
Track immediate `Sources` when possible
Updated a month ago
Use file lock to avoid concurrent edits to dataset_description.json
Updated a month ago
dsi_studio_autotrack not running
Updated a month ago6
Bad preprocessing results for dwi with PSR+ image orientation
Updated a month ago
qsiprep pennbbl/qsiprep:0.21.4 is linked to the development version v0.21.5.dev0+g36b93fe.d20240504
Closed a month ago2
error encountered at eddy step when no T1w data are available
Updated a month ago4
dsistudio autotrack recon not saving out all bundles
Closed 2 months ago6
Module merge_dwis has no output called out_dwi_phase
Closed 2 months ago
2 phases SDC outputs partial fieldmap
Updated 2 months ago
error when using option --distortion-group-merge
Updated 2 months ago
TOPUP distortion correction field is flipped for my LPS oriented dwi data
Updated 2 months ago3
Add logging message when qc metrics on raw data are low
Updated 2 months ago
[BUG] List of bundles not fixed in hbcd recon workflow
Closed 2 months ago
FUGUE error (no attribute 'FUGUEvsm2ANTSwarp')
Closed 2 months ago3
[ENH] Compress tck files from Autotrack workflow
Closed 2 months ago
synthseg error when using GPU
Closed 2 months ago10
Eddy error when using GPU
Closed 2 months ago2
[ENH] Compress nifti files written by the tortoise workflows
Closed 2 months ago
Error in connecting qsirecon nodes (0.20.1dev)
Closed 2 months ago24
Remove `ReadSidecarJSON` and `get_metadata_for_nifti`
Closed 3 months ago
Two desc-<value> pairs in qsirecon output
Closed 3 months ago8
Error when using FUGUE for fieldmap (after removing niworkflows)
Closed 3 months ago3
SIFT2 mu
Closed 3 months ago1
SIFT2 parameters
Closed 3 months ago1
[ENH] QSIPrep and SDCFlows
Updated 3 months ago
Error when using mif_to_fib in recon workflow
Closed 3 months ago1
mrtrix_multishell_msmt_ACT-hsvs crashing
Closed 3 months ago2
Request for option to include ses-<label> entity in all files when a session is present
Updated 4 months ago8
Parts of documentation not rendering for latest
Closed 4 months ago
preprocessed T1w data as input to QSIPrep
Updated 4 months ago
qsirecon workflow connection error: Trying to connect anat_ingress_wf.register_fs_to_qsiprep_wf:outputnode.brain to anat_ingress_wf.outputnode:brain but input 'brain' of node 'anat_ingress_wf.outputnode' is already connected
Closed 4 months ago1
b0 harmonization error if there is only one b0 image in a series
Updated 4 months ago1
[BUG] coregistration issues
Closed 5 months ago5
Allow `topup` to use multiple threads
Closed 5 months ago3
bug in mrtrix_multishell_msmt_ACT-hsvs recon? TypeError: expected str, bytes or os.PathLike object, not NoneType
Closed 5 months ago3
[ENH] add --prefer-gpu
Updated 5 months ago2
omp_nthreads not passed to merge_and_denoise_wf on one branch
Updated 5 months ago1
QSIPrep should fail when missing critical files
Updated 6 months ago3
Referencing a non-existing variable when using QSIRecon with mrtrix_multishell_msmt_ACT-hsvs specs.
Closed 6 months ago1