Apply fails with single input file
tnitka opened this issue · comments
When running Apply with a single input file, Snekmer fails with the error message
InvalidIndexError in line 292 of /qfs/people/nitk592/snekmer-main/Snekmer/src/snekmer/snekmer/rules/apply.smk: Reindexing only valid with uniquely valued Index objects
It's currently possible to work around this issue by splitting the input into 2 or more fasta files.
This error also sometimes occurs even if the input sequences are split into multiple files. This might be Snekmer reading the same name for two sequences, which shouldn't be happening here as each sequence is uniquely labeled by profmark.
@tnitka would you be able to provide the same files you used? Haven't been able to reproduce this yet.