compare, evaluate disagreement of the simulations with the growth experimental data
vladpetyuk opened this issue · comments
Vlad Petyuk commented
Andrew McNaughton commented
Can we include which growth experimental data we would like to compare to simulations?
So far I have 2 binary models working:
- RT - SE (https://github.com/PNNL-CompBio/ConsortiumModels/blob/main/Notebooks/Binary_Consortium_SE_RT.ipynb)
- AV - SE (https://github.com/PNNL-CompBio/ConsortiumModels/blob/main/Notebooks/Binary_Consortium_AV_SE.ipynb)
And one model partially working:
- AV - RT
Andrew McNaughton commented
AV-RT model is now able to produce community binary growth.
https://github.com/PNNL-CompBio/ConsortiumModels/blob/main/Notebooks/Binary_Consortium_AV_RT.ipynb
Andrew McNaughton commented
@PBohutskyi which of the binaries do we have experimental data for, for the comparison with simulation? Which nutrient conditions have we observed growth in?