Can not set up the required third party libraries after the docker build
sbonaime opened this issue · comments
Python 3.9.5
Debian BullEyes 5.10.179-2.
gcc (Ubuntu 10.3.0-1ubuntu1) 10.3.0
Can not set up the required third party libraries after the docker build successfully
I install Miniconda for python and also try installing libpng-dev libjpeg-dev libz3-dev
Here is the (long) error message after launching bash configure.sh reinstall. I cut some parts because log was too long...
-- Installing: /code/SuperBuild/install/share/opencv4/lbpcascades/lbpcascade_silverware.xml
[ 59%] Completed 'opencv'
[ 59%] Built target opencv
In file included from Src/Ply.h:56,
from Src/VertexStream.h:33,
from Src/FEMTree.h:51,
from Src/PoissonRecon.cpp:47:
Src/CoredMesh.h: In constructor ‘CoredFileMeshData<Index, VertexFactory>::CoredFileMeshData(const VertexFactory&, const char*) [with Index = int; VertexFactory = VertexFactory::Factory<float, VertexFactory::PositionFactory<float, 3>, VertexFactory::NormalFactory<float, 3>, VertexFactory::ValueFactory<float>, VertexFactory::EmptyFactory<float> >]’:
Src/CoredMesh.h:156:67: warning: ‘XXXXXX’ directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
156 | if( fileHeader && strlen(fileHeader) ) sprintf( _fileName , "%sXXXXXX" , fileHeader );
| ^~~~~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 7 and 1030 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from Src/Ply.h:56,
from Src/VertexStream.h:33,
from Src/FEMTree.h:51,
from Src/PoissonRecon.cpp:47:
Src/CoredMesh.h: In constructor ‘CoredFileMeshData<Index, VertexFactory>::CoredFileMeshData(const VertexFactory&, const char*) [with Index = int; VertexFactory = VertexFactory::Factory<float, VertexFactory::PositionFactory<float, 3>, VertexFactory::DynamicFactory<float> >]’:
Src/CoredMesh.h:156:67: warning: ‘XXXXXX’ directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
156 | if( fileHeader && strlen(fileHeader) ) sprintf( _fileName , "%sXXXXXX" , fileHeader );
| ^~~~~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 7 and 1030 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from Src/Ply.h:56,
from Src/VertexStream.h:33,
from Src/FEMTree.h:51,
from Src/PoissonRecon.cpp:47:
Src/CoredMesh.h: In constructor ‘CoredFileMeshData<Index, VertexFactory>::CoredFileMeshData(const VertexFactory&, const char*) [with Index = int; VertexFactory = VertexFactory::Factory<float, VertexFactory::PositionFactory<float, 3>, VertexFactory::NormalFactory<float, 3>, VertexFactory::DynamicFactory<float> >]’:
Src/CoredMesh.h:156:67: warning: ‘XXXXXX’ directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
156 | if( fileHeader && strlen(fileHeader) ) sprintf( _fileName , "%sXXXXXX" , fileHeader );
| ^~~~~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 7 and 1030 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from Src/Ply.h:56,
from Src/VertexStream.h:33,
from Src/FEMTree.h:51,
from Src/PoissonRecon.cpp:47:
Src/CoredMesh.h: In constructor ‘CoredFileMeshData<Index, VertexFactory>::CoredFileMeshData(const VertexFactory&, const char*) [with Index = int; VertexFactory = VertexFactory::Factory<float, VertexFactory::PositionFactory<float, 3>, VertexFactory::ValueFactory<float>, VertexFactory::DynamicFactory<float> >]’:
Src/CoredMesh.h:156:67: warning: ‘XXXXXX’ directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
156 | if( fileHeader && strlen(fileHeader) ) sprintf( _fileName , "%sXXXXXX" , fileHeader );
| ^~~~~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 7 and 1030 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from Src/Ply.h:56,
from Src/VertexStream.h:33,
from Src/FEMTree.h:51,
from Src/PoissonRecon.cpp:47:
Src/CoredMesh.h: In constructor ‘CoredFileMeshData<Index, VertexFactory>::CoredFileMeshData(const VertexFactory&, const char*) [with Index = int; VertexFactory = VertexFactory::Factory<float, VertexFactory::PositionFactory<float, 3>, VertexFactory::RGBColorFactory<float> >]’:
Src/CoredMesh.h:156:67: warning: ‘XXXXXX’ directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
156 | if( fileHeader && strlen(fileHeader) ) sprintf( _fileName , "%sXXXXXX" , fileHeader );
| ^~~~~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 7 and 1030 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from Src/Ply.h:56,
from Src/VertexStream.h:33,
from Src/FEMTree.h:51,
from Src/PoissonRecon.cpp:47:
Src/CoredMesh.h: In constructor ‘CoredFileMeshData<Index, VertexFactory>::CoredFileMeshData(const VertexFactory&, const char*) [with Index = int; VertexFactory = VertexFactory::Factory<float, VertexFactory::PositionFactory<float, 3>, VertexFactory::NormalFactory<float, 3>, VertexFactory::ValueFactory<float>, VertexFactory::DynamicFactory<float> >]’:
Src/CoredMesh.h:156:67: warning: ‘XXXXXX’ directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
156 | if( fileHeader && strlen(fileHeader) ) sprintf( _fileName , "%sXXXXXX" , fileHeader );
| ^~~~~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 7 and 1030 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from Src/Ply.h:56,
from Src/VertexStream.h:33,
from Src/FEMTree.h:51,
from Src/PoissonRecon.cpp:47:
Src/CoredMesh.h: In constructor ‘CoredFileMeshData<Index, VertexFactory>::CoredFileMeshData(const VertexFactory&, const char*) [with Index = int; VertexFactory = VertexFactory::Factory<float, VertexFactory::PositionFactory<float, 3>, VertexFactory::EmptyFactory<float> >]’:
Src/CoredMesh.h:156:67: warning: ‘XXXXXX’ directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
156 | if( fileHeader && strlen(fileHeader) ) sprintf( _fileName , "%sXXXXXX" , fileHeader );
| ^~~~~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 7 and 1030 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from Src/Ply.h:56,
from Src/VertexStream.h:33,
from Src/FEMTree.h:51,
from Src/Poisson
......................
......................
......................
......................
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 4 and 1027 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:376:84: warning: ‘PR_’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
376 | else sprintf( tempHeader , "%s%cPR_" , tempPath , FileSeparator );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:375:82: warning: ‘PR_’ directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
375 | if( tempPath[ strlen( tempPath )-1 ]==FileSeparator ) sprintf( tempHeader , "%sPR_" , tempPath );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 4 and 1027 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:376:84: warning: ‘PR_’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
376 | else sprintf( tempHeader , "%s%cPR_" , tempPath , FileSeparator );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:375:82: warning: ‘PR_’ directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
375 | if( tempPath[ strlen( tempPath )-1 ]==FileSeparator ) sprintf( tempHeader , "%sPR_" , tempPath );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 4 and 1027 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp: In function ‘void Execute(UIntPack<CSignatures ...>, const AuxDataFactory&) [with Real = float; AuxDataFactory = VertexFactory::EmptyFactory<float>; unsigned int ...FEMSigs = {3, 3, 3}]’:
Src/PoissonRecon.cpp:376:84: warning: ‘PR_’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
376 | else sprintf( tempHeader , "%s%cPR_" , tempPath , FileSeparator );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:375:82: warning: ‘PR_’ directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
375 | if( tempPath[ strlen( tempPath )-1 ]==FileSeparator ) sprintf( tempHeader , "%sPR_" , tempPath );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 4 and 1027 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:376:84: warning: ‘PR_’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
376 | else sprintf( tempHeader , "%s%cPR_" , tempPath , FileSeparator );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:375:82: warning: ‘PR_’ directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
375 | if( tempPath[ strlen( tempPath )-1 ]==FileSeparator ) sprintf( tempHeader , "%sPR_" , tempPath );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 4 and 1027 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:376:84: warning: ‘PR_’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
376 | else sprintf( tempHeader , "%s%cPR_" , tempPath , FileSeparator );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:375:82: warning: ‘PR_’ directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
375 | if( tempPath[ strlen( tempPath )-1 ]==FileSeparator ) sprintf( tempHeader , "%sPR_" , tempPath );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 4 and 1027 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:376:84: warning: ‘PR_’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
376 | else sprintf( tempHeader , "%s%cPR_" , tempPath , FileSeparator );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:375:82: warning: ‘PR_’ directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
375 | if( tempPath[ strlen( tempPath )-1 ]==FileSeparator ) sprintf( tempHeader , "%sPR_" , tempPath );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 4 and 1027 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp: In function ‘void Execute(UIntPack<CSignatures ...>, const AuxDataFactory&) [with Real = float; AuxDataFactory = VertexFactory::RGBColorFactory<float>; unsigned int ...FEMSigs = {3, 3, 3}]’:
Src/PoissonRecon.cpp:376:84: warning: ‘PR_’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
376 | else sprintf( tempHeader , "%s%cPR_" , tempPath , FileSeparator );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:375:82: warning: ‘PR_’ directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
375 | if( tempPath[ strlen( tempPath )-1 ]==FileSeparator ) sprintf( tempHeader , "%sPR_" , tempPath );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 4 and 1027 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:376:84: warning: ‘PR_’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
376 | else sprintf( tempHeader , "%s%cPR_" , tempPath , FileSeparator );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:375:82: warning: ‘PR_’ directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
375 | if( tempPath[ strlen( tempPath )-1 ]==FileSeparator ) sprintf( tempHeader , "%sPR_" , tempPath );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 4 and 1027 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:376:84: warning: ‘PR_’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
376 | else sprintf( tempHeader , "%s%cPR_" , tempPath , FileSeparator );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:375:82: warning: ‘PR_’ directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
375 | if( tempPath[ strlen( tempPath )-1 ]==FileSeparator ) sprintf( tempHeader , "%sPR_" , tempPath );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 4 and 1027 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:376:84: warning: ‘PR_’ directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
376 | else sprintf( tempHeader , "%s%cPR_" , tempPath , FileSeparator );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
Src/PoissonRecon.cpp:375:82: warning: ‘PR_’ directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
375 | if( tempPath[ strlen( tempPath )-1 ]==FileSeparator ) sprintf( tempHeader , "%sPR_" , tempPath );
| ^~~
In file included from /usr/include/stdio.h:866,
from Src/PoissonRecon.cpp:40:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 4 and 1027 bytes into a destination of size 1024
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
40 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
[ 60%] Performing install step for 'poissonrecon'
[ 60%] Completed 'poissonrecon'
[ 60%] Built target poissonrecon
make: *** [Makefile:103: all] Error 2
(odmdev)[bonaime:/code] 12m13s 2 $
```
You need to check the full log for errors (which sometimes are not at the end). Make sure you're not running out of memory!
Ok the first Error I have is
CMake Error at cmake_install.cmake:125 (file):
file INSTALL cannot copy file
"/code/SuperBuild/build/gflags/gflags-registry-entry" to
"/home/bonaime/.cmake/packages/gflags/c872b97259e15f7dbf4904fb8eb2bb74":
Permission denied.
make[3]: *** [Makefile:105: install] Error 1
/code/SuperBuild/src/lastools/src/geoprojectionconverter.cpp: In member function ‘bool GeoProjectionConverter::set_VerticalCSTypeGeoKey(short int, char*)’:
/code/SuperBuild/src/lastools/src/geoprojectionconverter.cpp:4266:53: warning: format not a string literal and no format arguments [-Wformat-security]
4266 | if (description) sprintf(description, name);
| ^
make[2]: *** [CMakeFiles/gflags.dir/build.make:93: gflags/stamp/gflags-install] Error 2
make[1]: *** [CMakeFiles/Makefile2:499: CMakeFiles/gflags.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 30%] Building CXX object libs/mve/CMakeFiles/mve.dir/mesh_io_ply.cc.o
And I have those warnings
Installing collected packages: vmem, Shapely, repoze.lru, pytz, Pysolar, ODMExifRead, mpmath, flatbuffers, xmltodict, wrapt, urllib3, typing
-extensions, threadpoolctl, sympy, soupsieve, six, PyYAML, pyparsing, protobuf, Pillow, piexif, packaging, numpy, mypy-extensions, munch, lx
ml, kiwisolver, joblib, idna, humanfriendly, decorator, cycler, cloudpickle, click, charset-normalizer, certifi, attrs, affine, typing-inspe
ct, trimesh, tifffile, snuggs, scipy, requests, Pywavelets, python-dateutil, pyproj, networkx, marshmallow, imageio, fpdf2, edt, deprecated,
coloredlogs, codem, cligj, click-plugins, beautifulsoup4, appsettings, scikit-learn, scikit-image, requests-toolbelt, rasterio, pandas, onn
xruntime, matplotlib, Fiona, dataclasses-json, pyodm, pygltflib
WARNING: The script isympy is installed in '/home/bonaime/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts f2py, f2py3 and f2py3.9 are installed in '/home/bonaime/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script humanfriendly is installed in '/home/bonaime/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script normalizer is installed in '/home/bonaime/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts lsm2bin, tiff2fsspec, tiffcomment and tifffile are installed in '/home/bonaime/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script pyproj is installed in '/home/bonaime/.local/bin' which is not on PATH.
I try to create a new user on my Debian with the same result.
Next idea was to change the gflags version in the make file from 2.1.2 to 2.2.2.
And now I don't have any compilation issue ! :-)
@pierotofy Is there some reason to use gflags 2.1.2 from Mar 24, 2015 instead of 2.2.2 from Nov 11, 2018 ?
Thanks