Giters

NicoKiaru / ABBA-Python

How to use Aligning Big Brains and Atlases with Python

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Rat atlas fails (win installer)

NicoKiaru opened this issue · comments

commented

Windows installer

java.util.concurrent.ExecutionException: java.lang.RuntimeException: Module threw error
	at java.base/java.util.concurrent.FutureTask.report(FutureTask.java:122)
	at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:191)
	at ch.epfl.biop.atlas.scijava.AtlasChooserCommand.run(AtlasChooserCommand.java:72)
	at org.scijava.module.ModuleRunner.run(ModuleRunner.java:163)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63)
	at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
	at java.base/java.lang.Thread.run(Thread.java:829)
Caused by: java.lang.RuntimeException: Module threw error
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:130)
	... 6 more
Caused by: java.lang.NoClassDefFoundError: javax/xml/bind/JAXBContext
	at ch.epfl.biop.atlas.rat.waxholm.spraguedawley.v4.WaxholmSpragueDawleyRatV4Ontology.initialize(WaxholmSpragueDawleyRatV4Ontology.java:59)
	at ch.epfl.biop.atlas.rat.waxholm.spraguedawley.v4p1.WaxholmSpragueDawleyRatV4p1Atlas.initialize(WaxholmSpragueDawleyRatV4p1Atlas.java:54)
	at ch.epfl.biop.atlas.rat.waxholm.spraguedawley.v4p1.command.WaxholmSpragueDawleyRatV4p1Command.run(WaxholmSpragueDawleyRatV4p1Command.java:70)
	at org.scijava.command.CommandModule.run(CommandModule.java:196)
	at org.scijava.module.ModuleRunner.run(ModuleRunner.java:163)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124)
	... 6 more
Caused by: java.lang.ClassNotFoundException: javax.xml.bind.JAXBContext
	at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:581)
	at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
	at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522)
	... 12 more
commented

Solved by using jdk 8 instead of jdk 11. So long for the potential perf improvements.