Rat atlas fails (win installer)
NicoKiaru opened this issue · comments
Windows installer
java.util.concurrent.ExecutionException: java.lang.RuntimeException: Module threw error
at java.base/java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:191)
at ch.epfl.biop.atlas.scijava.AtlasChooserCommand.run(AtlasChooserCommand.java:72)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:163)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63)
at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:829)
Caused by: java.lang.RuntimeException: Module threw error
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:130)
... 6 more
Caused by: java.lang.NoClassDefFoundError: javax/xml/bind/JAXBContext
at ch.epfl.biop.atlas.rat.waxholm.spraguedawley.v4.WaxholmSpragueDawleyRatV4Ontology.initialize(WaxholmSpragueDawleyRatV4Ontology.java:59)
at ch.epfl.biop.atlas.rat.waxholm.spraguedawley.v4p1.WaxholmSpragueDawleyRatV4p1Atlas.initialize(WaxholmSpragueDawleyRatV4p1Atlas.java:54)
at ch.epfl.biop.atlas.rat.waxholm.spraguedawley.v4p1.command.WaxholmSpragueDawleyRatV4p1Command.run(WaxholmSpragueDawleyRatV4p1Command.java:70)
at org.scijava.command.CommandModule.run(CommandModule.java:196)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:163)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124)
... 6 more
Caused by: java.lang.ClassNotFoundException: javax.xml.bind.JAXBContext
at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:581)
at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522)
... 12 more
Solved by using jdk 8 instead of jdk 11. So long for the potential perf improvements.