Nextomics / NextDenovo

Fast and accurate de novo assembler for long reads

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Can I assemble a gap free genome using only regular ONT data?

XXH123a opened this issue · comments

Dear Dr. Hu,

For example, the assembly results of merge Nextdenovo and Necat, or assembling both at the chromosome level to fill the gap? My Genome size is 1G in size and has 36 chromosomes. I just want to get one or two gapfree. You think that method is better or not?

It's hard to say, I'm not sure