Nextomics / NextDenovo

Fast and accurate de novo assembler for long reads

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Error in cns_align1 step

lidachuis opened this issue · comments

Hi moold!

Question or Expected behavior
This is my first time to use nextdenove.
This is my working path:01_rundir/02.cns_align/02.cns_align.sh.work/cns_align1
I have six such tasks, which have been running for a long time, and the result log is no longer updated. I want to ask what the problem is. Or what else do I need to provide?

NextDenovo
nextDenovo v2.5.0
I use slurm delivery system.

This is my log
nextDenovo.sh.e.txt

Could you try to use the command top to check wether the cpu TIME is increasing.
If it is , just wait, or kill it and rerun .

OK,Thanks!