What are the parts of contig titles mean for?
Neo-xbx-00 opened this issue · comments
Question or Expected behavior
A clear and concise description of your question or what you expected to happen.
Just like the title.
Operating system
Which operating system and version are you using?
You can use the command lsb_release -a to get it.
Centos-7
GCC
What version of GCC are you using?
You can use the command gcc -v to get it.
Python
What version of Python are you using?
You can use the command python --version to get it.
NextDenovo
What version of NextDenovo are you using?
You can use the command nextDenovo -v to get it.
2.4.0
Additional context (Optional)
Add any other context about the problem here.
ctg000110 type:s:linear length:i:102686 node:i:8
ctg000120 type:s:linear length:i:489762 node:i:67
ctg000130 type:s:linear length:i:55111 node:s:unknown
ctg000140 type:s:linear length:i:390488 node:s:unknown
I found the titles of my contigs like above, and want know their meanings. Like "type:s:linear", and what the difference between "node:s:unknown" and "node:i:8" ?
The 8 in node:i:8 means there are 8 complete reads in this contig,
The unknown in "node:s:unknown" means some reads are split, so it can not give an exact read number.
No