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Nextomics / NextDenovo

Fast and accurate de novo assembler for long reads

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How to get the assembly greater then 3.5Gb?

Ural-Yunusbaev opened this issue · comments

commented

Question or Expected behavior
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Operating system
Which operating system and version are you using?
You can use the command lsb_release -a to get it.

GCC
What version of GCC are you using?
You can use the command gcc -v to get it.

Python
What version of Python are you using?
You can use the command python --version to get it.

NextDenovo
What version of NextDenovo are you using?
You can use the command nextDenovo -v to get it.

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commented

Hey there!
I am working with a genome larger than 16Gb. ND assembles only 3.5Gb. Is it possible to somehow make ND go to 17Gb?
Thanks,
Ural

commented

The released version does not support assembly for genome size > 3.5GB. You can try to use wtdbg, smrtdenovo, miniasm, fly or other tools to assemble with corrected reads generated by NextDenovo , which usually produce a better result than using raw reads.