NationalGenomicsInfrastructure / ngi_reports

Code to generate reports for use by the NGI in SciLifeLab

Home Page:http://nationalgenomicsinfrastructure.github.io/ngi_reports/

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Don't kill entire run if a single sample fails

ewels opened this issue · comments

At the moment, if a single sample report can't be made, the entire report generation for all samples won't work. That sample has to be removed manually from the XML.

Better instead to throw a warning and remove that sample from the Class and continue.

Count and throw a warning as a last step so it's obvious that some have failed.