NCBI-Codeathons

SWIGG

A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers

OMOPOmics

Patient 'omics data in OMOP format

Identifying-bulk-RNA-seq-derived-biomarkers-of-cancer-risk-within-single-cell-populations

SeqMoid

Clouseau

A QC suite for large VCF files

Host_Phage_Interactions

Understanding how Phages Affect Microbial Disease

Understand-cancer-evolution-through-single-cell-expression-dynamics

Use-UMLS-and-Python-to-classify-website-visitor-queries-into-measurable-categories

Classify your health/medical/life sciences search terms

Virus_Graphs

Making Representative Genome Graphs from Eukaryotic Viruses and Phages

NCGAS-cloud-workshop

NCGAS Cloud Workshop

Integrating-multi-omics-data-in-yeast

XXX is a all-inclusive pipeline we developed for multi-omics data analysis. XXX can take genomics, RNA-seq, proteomics and metabolomics data (for yeast) and integrate with Canonical Correlation Analysis and analyze by OPLS-DA for variables driving the differences between samples. Difference driving pathways then can then be visualized through visNetwork. Lastly, follow-up experiment guidance and be yielded through COBRA simulations with Yeast 8 database.

MASCARA

airbending_isoseq

Diversifying-the-pipeline-for-identifying-bulk-RNA-seq-derived-biomarkers-of-cancer-risk-within-sing

GWAusage

Genomic Responses to Infectious Disease

SARS-CoV-2-host-genes

Characterization of SARS-CoV-2 host genes

The_Virus_Index

A Federated Index of Virus Metadata and Hyperdata in Public Repositories

Genes-in-the-Hood

Identify antiphage defense systems in the bacterial pangenome

single-cell-comparison

SLEuth

Assessment-of-log-transformation-and-z-scores-for-scRNA-seq-data-analysis

Automating-tools-to-search-and-analyze-large-genome-sequence-repositories

DEFINITION-OF-CELL-CYCLE-STATE-IN-LABEL-FREE-IMAGES

Domain_HMM_Boundaries

Refining Domain Boundaries and Performing Large Scale Parsing

SCANCNV

Creating an awesome tool to perform CNV QC on WES data independent of callers/platform that focuses on confidence and reportability of CNV calls, particularly in clinical data.

Taxonomy_Domain_Integration

Making a Domain Map Across Approximate Metagenomic Taxonomy.

VirusGraphs3

Solidifying the VirusGraphs Infrastructure for Deployment

NGcubed

NI

Finding NeoEpitomes in Transcriptomes

MetGraphs

Cancer Graphs of Metastases