BCL Convert module halves the "% Bases ≥ Q30 (PF)" in MultiQC 1.19
hmontenegro opened this issue · comments
hmontenegro commented
Description of bug
In MultiQC 1.19, the "% Bases ≥ Q30 (PF)" is halved in relation to the correct figures in the "Sample Statistics" table - the "Lane Statistics" shows the correct percentages.
MultiQC versions 1.13 and 1.17 show correct numbers.
File that triggers the error
Fastq Report_ds.f761a851b8764790a214943eb9752e87.zip
MultiQC Error log
$ multiqc -ip -n bclconvert -o . ../../basespace/appsession/Fastq\ Report_ds.f761a851b8764790a214943eb9752e87/
/home/program2/bin/MultiQC/1.19/lib64/python3.9/site-packages/networkx/utils/backends.py:135: RuntimeWarning: networkx backend defined more than once: nx-loopback
backends.update(_get_backends("networkx.backends"))
/// MultiQC 🔍 | v1.19
| multiqc | Search path : /home/hmontene/runs/Illumina/NextSeq/231213_VH00451_157_AACCMNKHV/basespace/appsession/Fastq Report_ds.f761a851b8764790a214943eb9752e87
| searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 56/56
| bclconvert | 2 lanes and 36 samples found
| multiqc | Report : bclconvert.html
| multiqc | Data : bclconvert_data
| multiqc | MultiQC complete
Before submitting
- I have read the troubleshooting documentation.
- I am using the latest release of MultiQC.
- I have included a full MultiQC log, not truncated.
- I have attached an input file (.zip if necessary) that triggers the error.
Vlad Savelyev commented
Thank you so much for filing an issue, and sorry for this 🤦 - should be fixed with #2250