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BCL Convert module halves the "% Bases ≥ Q30 (PF)" in MultiQC 1.19

hmontenegro opened this issue · comments

Description of bug

In MultiQC 1.19, the "% Bases ≥ Q30 (PF)" is halved in relation to the correct figures in the "Sample Statistics" table - the "Lane Statistics" shows the correct percentages.

MultiQC versions 1.13 and 1.17 show correct numbers.

File that triggers the error

Fastq Report_ds.f761a851b8764790a214943eb9752e87.zip

MultiQC Error log

$ multiqc -ip -n bclconvert -o . ../../basespace/appsession/Fastq\ Report_ds.f761a851b8764790a214943eb9752e87/
/home/program2/bin/MultiQC/1.19/lib64/python3.9/site-packages/networkx/utils/backends.py:135: RuntimeWarning: networkx backend defined more than once: nx-loopback
  backends.update(_get_backends("networkx.backends"))

  /// MultiQC 🔍 | v1.19

|           multiqc | Search path : /home/hmontene/runs/Illumina/NextSeq/231213_VH00451_157_AACCMNKHV/basespace/appsession/Fastq Report_ds.f761a851b8764790a214943eb9752e87
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 56/56  
|        bclconvert | 2 lanes and 36 samples found
|           multiqc | Report      : bclconvert.html
|           multiqc | Data        : bclconvert_data
|           multiqc | MultiQC complete

Before submitting

  • I have read the troubleshooting documentation.
  • I am using the latest release of MultiQC.
  • I have included a full MultiQC log, not truncated.
  • I have attached an input file (.zip if necessary) that triggers the error.

Thank you so much for filing an issue, and sorry for this 🤦 - should be fixed with #2250