Demo not working due to bad torch version
subditosdeChantal opened this issue · comments
subditosdeChantal commented
Hi,
I tried to run your demo and failed when importing models with,
> ---------------------------------------------------------------------------
>
> OSError Traceback (most recent call last)
>
> <ipython-input-5-bd1aa79e6e09> in <module>()
> ----> 1 import models
> 2 import simulate
>
> /content/models.py in <module>()
> 4 from torch.functional import F
> 5 from torch.optim import Adam
> ----> 6 from torch_geometric.nn import MetaLayer, MessagePassing
> 7 from torch.nn import Sequential as Seq, Linear as Lin, ReLU, Softplus
> 8 from torch.autograd import Variable, grad
>
> /usr/local/lib/python3.6/dist-packages/torch_geometric/__init__.py in <module>()
> 1 from .debug import is_debug_enabled, debug, set_debug
> ----> 2 import torch_geometric.nn
> 3 import torch_geometric.data
> 4 import torch_geometric.datasets
> 5 import torch_geometric.transforms
>
> /usr/local/lib/python3.6/dist-packages/torch_geometric/nn/__init__.py in <module>()
> 1 from .meta import MetaLayer
> ----> 2 from .data_parallel import DataParallel
> 3 from .reshape import Reshape
> 4 from .conv import * # noqa
> 5 from .norm import * # noqa
>
> /usr/local/lib/python3.6/dist-packages/torch_geometric/nn/data_parallel.py in <module>()
> 3
> 4 import torch
> ----> 5 from torch_geometric.data import Batch
> 6
> 7
>
> /usr/local/lib/python3.6/dist-packages/torch_geometric/data/__init__.py in <module>()
> ----> 1 from .data import Data
> 2 from .batch import Batch
> 3 from .dataset import Dataset
> 4 from .in_memory_dataset import InMemoryDataset
> 5 from .dataloader import DataLoader, DataListLoader, DenseDataLoader
>
> /usr/local/lib/python3.6/dist-packages/torch_geometric/data/data.py in <module>()
> 6 import torch
> 7 import torch_geometric
> ----> 8 from torch_sparse import coalesce, SparseTensor
> 9 from torch_geometric.utils import (contains_isolated_nodes,
> 10 contains_self_loops, is_undirected)
>
> /usr/local/lib/python3.6/dist-packages/torch_sparse/__init__.py in <module>()
> 11 ]:
> 12 torch.ops.load_library(importlib.machinery.PathFinder().find_spec(
> ---> 13 library, [osp.dirname(__file__)]).origin)
> 14
> 15 if torch.cuda.is_available() and torch.version.cuda: # pragma: no cover
>
> /usr/local/lib/python3.6/dist-packages/torch/_ops.py in load_library(self, path)
> 103 # static (global) initialization code in order to register custom
> 104 # operators with the JIT.
> --> 105 ctypes.CDLL(path)
> 106 self.loaded_libraries.add(path)
> 107
>
> /usr/lib/python3.6/ctypes/__init__.py in __init__(self, name, mode, handle, use_errno, use_last_error)
> 346
> 347 if handle is None:
> --> 348 self._handle = _dlopen(self._name, mode)
> 349 else:
> 350 self._handle = handle
>
> OSError: /usr/local/lib/python3.6/dist-packages/torch_sparse/_convert.so: undefined symbol: _ZN3c104impl23ExcludeDispatchKeyGuardC1ENS_11DispatchKeyE
I've solved it changing torch version,
!export CUDA=cu101 && pip install --upgrade torch-scatter==latest+${CUDA} torch-sparse==latest+${CUDA} -f https://pytorch-geometric.com/whl/torch-1.6.0.html
to 1.7.0,
!export CUDA=cu101 && pip install --upgrade torch-scatter==latest+${CUDA} torch-sparse==latest+${CUDA} -f https://pytorch-geometric.com/whl/torch-1.7.0.html
Regards,
Miles Cranmer commented
Hi,
Thanks for letting me know, and thanks for the fix! I will merge this right away.
Cheers!
Miles